BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914000

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49405.1 | Symbols:  | Uncharacterised protein family (UPF04...   704    0.0  


> AT1G49405.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr1:18284335-18284947 REVERSE LENGTH=459
Length=459

 Score =  704 bits (381),  Expect = 0.0
 Identities = 433/459 (94%), Gaps = 0/459 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGGAGGTCCCTAGCTCTGTGGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAA  60
            ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGTGGAGGTTCCTGGCTCTGTAGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAG  60

Query  61   ACGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC  120
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC  120

Query  121  ACTGCTTTCTGCTACTTGGTGACGATCATGTCATTAGCTATACCATGGAATCTGACATTA  180
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  121  ACTGCTTTCTGCTACTTGGTGACGATCATGTCTTTAGCTATACCATGGAATCTGACGTTA  180

Query  181  GCTGTAGTAGATATCTATTGCGTTCTTCTTAACCAACCATTTCAAAAGCCACGGATCCTT  240
            ||  | |||||||||||||| ||| ||||  | |||||||||||||||||||||||||||
Sbjct  181  GCAATGGTAGATATCTATTGTGTTATTCTCCAGCAACCATTTCAAAAGCCACGGATCCTT  240

Query  241  CTCGTTATATCTATTGTTGATTGGGTGGTGTCTGTTCTAGCTTTGGCTTCAGCTTCATCA  300
            |||| ||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct  241  CTCGCTATCTCTATTGGTGATTGGGTGGTGTCTGTTCTAGCGTTGGCTTCAGCGTCATCG  300

Query  301  GCAGCTAGTGTTGTAGATATTTTGCGATCAGACGAATCCTCTTGCCCTCCAACAATCTGC  360
            |||||||||||||| |||||| |||||||| |||||||||| |||||||||||||| |||
Sbjct  301  GCAGCTAGTGTTGTTGATATTCTGCGATCAAACGAATCCTCCTGCCCTCCAACAATATGC  360

Query  361  AACAGATATCAGTTTGCAGCAACATTAGctttcttgacttggttcttgtctctctcttct  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AACAGATATCAGTTTGCAGCAACATTAGCTTTCTTGACTTGGTTCTTGTCTCTCTCTTCT  420

Query  421  tctctcttcaatctctggttacttccttctctgatctAA  459
            |||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCTCTCTTCAATCTCTGGTTACTTCCTTCTCTGATCTAA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5