BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914004 Length=1014 Score E Sequences producing significant alignments: (Bits) Value AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:179... 944 0.0 > AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:17973697-17976389 REVERSE LENGTH=1979 Length=1979 Score = 944 bits (511), Expect = 0.0 Identities = 738/844 (87%), Gaps = 30/844 (4%) Strand=Plus/Plus Query 131 CTCCAAAACCTAAACC---TGAAGTTCAACCTCAACCTCAGACTAACGGGAAAC-CAACC 186 |||||||| ||||||| || |||||||||||||||| |||||| || |||| | ||| Sbjct 663 CTCCAAAAGCTAAACCAGATGTTGTTCAACCTCAACCTCTGACTAATGGAAAACTC-ACC 721 Query 187 TGGGAACAAAGTGAATTACCTGTTTCTCAACCACAGGATGAGATACATCCA-CAGCCGCA 245 |||||||| |||||||||||||| |||| |||| |||| || | | || || | ||| || Sbjct 722 TGGGAACAGAGTGAATTACCTGTCTCTCGACCAGAGGA-GATACAGATACAGCCGCCACA 780 Query 246 GGCACAGATACAGCCAC--CA-CCGATTAAGAGGCCACCAGGACGTCCTAGAAAGGATGG 302 | || | ||||||||| || ||| ||||||| || || || ||||||||||| ||||| Sbjct 781 GTTACCGTTACAGCCACAGCAGCCGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGATGG 840 Query 303 AGCTTTGCCTACAGTGAAGACTGCTGCTTCTGTTTCCGGTGGTGTGGAAATTGTGAAACG 362 | ||| ||| || |||||| | |||||||||||||||||||||||||| | ||||||||| Sbjct 841 AACTTCGCCGACGGTGAAGCCAGCTGCTTCTGTTTCCGGTGGTGTGGAGACTGTGAAACG 900 Query 363 AAGAGGTAGACCTCCGAGTGGAAGAGCTGCTGGAAGAGAGAGGAAGCCTACAGTTA-TCT 421 ||||||||||||||||||||||||||||||||| || ||||| ||||||| || || ||| Sbjct 901 AAGAGGTAGACCTCCGAGTGGAAGAGCTGCTGGGAGGGAGAGAAAGCCTATAG-TAGTCT 959 Query 422 CAGCTCCGGCTTCGGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGGC 481 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 960 CAGCTCCAGCTTCAGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGAC 1019 Query 482 CAAAGAGAGTTGATGCTGGTG---CTTCTTCTGTTGCTCCACCACCACAACCACC---TA 535 ||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| || Sbjct 1020 CAAAGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGCTCCACCACCACCACCACCAACTA 1079 Query 536 ACGTAGAGAGTGGAGGAGAGGAAGTTGCAGTCAAGAAACGAGGACGAGGACGGCCTCCTA 595 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1080 ACGTAGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTA 1139 Query 596 AGATCGGTGGTGTTATTAGGAAGCCTATGAAGCCTAAGAGAAGCTTTACTCGTACTGGTA 655 |||| || |||||||| ||||||||||||||||| | |||||||||| |||||||||| | Sbjct 1140 AGATTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAA 1199 Query 656 GACCCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGAGAGCTTCTGGACAACAAGATG 715 ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1200 AACCCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATG 1259 Query 716 GTGACTATGGAGAGCTCAAGAAGAAGCTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTG 775 ||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1260 GTGACTATGGAGAACTGAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTG 1319 Query 776 TTACTGTGTTGAAAGCTGAGATAGGAGGAACTGAAAATCAAGCGGTGGTTCAAGCCATAC 835 | | |||||||||| | ||||||||||||| || ||||||||| |||||||||||||||| Sbjct 1320 TAATTGTGTTGAAATCCGAGATAGGAGGAAGTGGAAATCAAGCAGTGGTTCAAGCCATAC 1379 Query 836 AGGACCTGGAAGGGACAACAGGAACAACAACGGAGACAACAAACAAGCCACAGCACATGG 895 ||||||||||||||| | | || | ||||||||||| ||||| ||||||||| Sbjct 1380 AGGACCTGGAAGGGATA---G---CA-----G-AGACAACAAACGAGCCAAAGCACATGG 1427 Query 896 AAGAAGTGCAGTTGCCAGACGAGGAACACCCTGAAACTGAACCCGAACCAGTGGGACAAG 955 ||||||||||| |||||||||||||||||| |||||| ||||| ||| ||| ||| |||| Sbjct 1428 AAGAAGTGCAGCTGCCAGACGAGGAACACCTTGAAACCGAACCAGAAGCAGAGGGTCAAG 1487 Query 956 GACA 959 |||| Sbjct 1488 GACA 1491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49681571383 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5