BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914004
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:179... 944 0.0
> AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:17973697-17976389
REVERSE LENGTH=1979
Length=1979
Score = 944 bits (511), Expect = 0.0
Identities = 738/844 (87%), Gaps = 30/844 (4%)
Strand=Plus/Plus
Query 131 CTCCAAAACCTAAACC---TGAAGTTCAACCTCAACCTCAGACTAACGGGAAAC-CAACC 186
|||||||| ||||||| || |||||||||||||||| |||||| || |||| | |||
Sbjct 663 CTCCAAAAGCTAAACCAGATGTTGTTCAACCTCAACCTCTGACTAATGGAAAACTC-ACC 721
Query 187 TGGGAACAAAGTGAATTACCTGTTTCTCAACCACAGGATGAGATACATCCA-CAGCCGCA 245
|||||||| |||||||||||||| |||| |||| |||| || | | || || | ||| ||
Sbjct 722 TGGGAACAGAGTGAATTACCTGTCTCTCGACCAGAGGA-GATACAGATACAGCCGCCACA 780
Query 246 GGCACAGATACAGCCAC--CA-CCGATTAAGAGGCCACCAGGACGTCCTAGAAAGGATGG 302
| || | ||||||||| || ||| ||||||| || || || ||||||||||| |||||
Sbjct 781 GTTACCGTTACAGCCACAGCAGCCGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGATGG 840
Query 303 AGCTTTGCCTACAGTGAAGACTGCTGCTTCTGTTTCCGGTGGTGTGGAAATTGTGAAACG 362
| ||| ||| || |||||| | |||||||||||||||||||||||||| | |||||||||
Sbjct 841 AACTTCGCCGACGGTGAAGCCAGCTGCTTCTGTTTCCGGTGGTGTGGAGACTGTGAAACG 900
Query 363 AAGAGGTAGACCTCCGAGTGGAAGAGCTGCTGGAAGAGAGAGGAAGCCTACAGTTA-TCT 421
||||||||||||||||||||||||||||||||| || ||||| ||||||| || || |||
Sbjct 901 AAGAGGTAGACCTCCGAGTGGAAGAGCTGCTGGGAGGGAGAGAAAGCCTATAG-TAGTCT 959
Query 422 CAGCTCCGGCTTCGGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGGC 481
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 960 CAGCTCCAGCTTCAGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGAC 1019
Query 482 CAAAGAGAGTTGATGCTGGTG---CTTCTTCTGTTGCTCCACCACCACAACCACC---TA 535
||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| ||
Sbjct 1020 CAAAGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGCTCCACCACCACCACCACCAACTA 1079
Query 536 ACGTAGAGAGTGGAGGAGAGGAAGTTGCAGTCAAGAAACGAGGACGAGGACGGCCTCCTA 595
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1080 ACGTAGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTA 1139
Query 596 AGATCGGTGGTGTTATTAGGAAGCCTATGAAGCCTAAGAGAAGCTTTACTCGTACTGGTA 655
|||| || |||||||| ||||||||||||||||| | |||||||||| |||||||||| |
Sbjct 1140 AGATTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAA 1199
Query 656 GACCCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGAGAGCTTCTGGACAACAAGATG 715
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1200 AACCCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATG 1259
Query 716 GTGACTATGGAGAGCTCAAGAAGAAGCTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTG 775
||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1260 GTGACTATGGAGAACTGAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTG 1319
Query 776 TTACTGTGTTGAAAGCTGAGATAGGAGGAACTGAAAATCAAGCGGTGGTTCAAGCCATAC 835
| | |||||||||| | ||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 1320 TAATTGTGTTGAAATCCGAGATAGGAGGAAGTGGAAATCAAGCAGTGGTTCAAGCCATAC 1379
Query 836 AGGACCTGGAAGGGACAACAGGAACAACAACGGAGACAACAAACAAGCCACAGCACATGG 895
||||||||||||||| | | || | ||||||||||| ||||| |||||||||
Sbjct 1380 AGGACCTGGAAGGGATA---G---CA-----G-AGACAACAAACGAGCCAAAGCACATGG 1427
Query 896 AAGAAGTGCAGTTGCCAGACGAGGAACACCCTGAAACTGAACCCGAACCAGTGGGACAAG 955
||||||||||| |||||||||||||||||| |||||| ||||| ||| ||| ||| ||||
Sbjct 1428 AAGAAGTGCAGCTGCCAGACGAGGAACACCTTGAAACCGAACCAGAAGCAGAGGGTCAAG 1487
Query 956 GACA 959
||||
Sbjct 1488 GACA 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5