BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914005

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50050.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   344    3e-94


> AT1G50050.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr1:18546165-18549046 FORWARD LENGTH=681
Length=681

 Score =  344 bits (186),  Expect = 3e-94
 Identities = 304/359 (85%), Gaps = 16/359 (4%)
 Strand=Plus/Plus

Query  1    CACTCACAACACC-CCCGTGCGCAGGTTGGAGTACCAAACGTCGTGTGGGACACA-ACGG  58
            ||||||||||||| |||||||||||||||||||| | || || ||||||||||||  | |
Sbjct  96   CACTCACAACACCGCCCGTGCGCAGGTTGGAGTAGCGAATGTTGTGTGGGACACAGTC-G  154

Query  59   TCGCGACCTACGCATTGAACTATGCGAATTCTAGAAAAGTCGACTGCAGCCTTA----CT  114
            | ||| ||||||||   |||||||||||| |||||||||||||||||||||| |    ||
Sbjct  155  TAGCGGCCTACGCAACAAACTATGCGAATGCTAGAAAAGTCGACTGCAGCCTCACGCCCT  214

Query  115  -AACTCGGGAGGACCATATGGAGAAAACCTAGCTAGGGGAAGTAGTG-CTATCTTCACAG  172
             ||||  |||||| | ||||||||||||||||| |  |||| || || || | |||||||
Sbjct  215  CAACT--GGAGGATCTTATGGAGAAAACCTAGCCAATGGAAATAATGCCT-TGTTCACAG  271

Query  173  GCGTATCGGCCGTGGCTTC-TTGGGTCGCCGAGAAACCTTACTACAACCACACCAG-CAA  230
            | ||| | ||||| |  || ||||||   ||||||||||||||||||| ||| | | |||
Sbjct  272  GTGTAGCCGCCGT-GAATCTTTGGGTTAACGAGAAACCTTACTACAACTACA-CTGCCAA  329

Query  231  TTCTTGCATAGGTGGACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT  290
            | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  330  TGCATGCATAGGTGCACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT  389

Query  291  GAAGATAGGGTGTGCTAGAGTTCCATGCAACAATGGTTGGTATTTCGTTAGTTGTAACT  349
            |||||||||||||||||| |||| ||||||||||||  ||||||||||  |||||||||
Sbjct  390  GAAGATAGGGTGTGCTAGGGTTCTATGCAACAATGGCGGGTATTTCGTGGGTTGTAACT  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5