BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914005 Length=354 Score E Sequences producing significant alignments: (Bits) Value AT1G50050.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 344 3e-94 > AT1G50050.1 | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr1:18546165-18549046 FORWARD LENGTH=681 Length=681 Score = 344 bits (186), Expect = 3e-94 Identities = 304/359 (85%), Gaps = 16/359 (4%) Strand=Plus/Plus Query 1 CACTCACAACACC-CCCGTGCGCAGGTTGGAGTACCAAACGTCGTGTGGGACACA-ACGG 58 ||||||||||||| |||||||||||||||||||| | || || |||||||||||| | | Sbjct 96 CACTCACAACACCGCCCGTGCGCAGGTTGGAGTAGCGAATGTTGTGTGGGACACAGTC-G 154 Query 59 TCGCGACCTACGCATTGAACTATGCGAATTCTAGAAAAGTCGACTGCAGCCTTA----CT 114 | ||| |||||||| |||||||||||| |||||||||||||||||||||| | || Sbjct 155 TAGCGGCCTACGCAACAAACTATGCGAATGCTAGAAAAGTCGACTGCAGCCTCACGCCCT 214 Query 115 -AACTCGGGAGGACCATATGGAGAAAACCTAGCTAGGGGAAGTAGTG-CTATCTTCACAG 172 |||| |||||| | ||||||||||||||||| | |||| || || || | ||||||| Sbjct 215 CAACT--GGAGGATCTTATGGAGAAAACCTAGCCAATGGAAATAATGCCT-TGTTCACAG 271 Query 173 GCGTATCGGCCGTGGCTTC-TTGGGTCGCCGAGAAACCTTACTACAACCACACCAG-CAA 230 | ||| | ||||| | || |||||| ||||||||||||||||||| ||| | | ||| Sbjct 272 GTGTAGCCGCCGT-GAATCTTTGGGTTAACGAGAAACCTTACTACAACTACA-CTGCCAA 329 Query 231 TTCTTGCATAGGTGGACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT 290 | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 330 TGCATGCATAGGTGCACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGT 389 Query 291 GAAGATAGGGTGTGCTAGAGTTCCATGCAACAATGGTTGGTATTTCGTTAGTTGTAACT 349 |||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||| Sbjct 390 GAAGATAGGGTGTGCTAGGGTTCTATGCAACAATGGCGGGTATTTCGTGGGTTGTAACT 448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16588357170 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5