BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914009

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52470.1 | Symbols:  | alpha/beta-Hydrolases superfamily pro...   418    3e-116
  AT1G52460.1 | Symbols:  | alpha/beta-Hydrolases superfamily pro...  67.6    1e-10 


> AT1G52470.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein 
| chr1:19553217-19555543 FORWARD LENGTH=1024
Length=1024

 Score =  418 bits (226),  Expect = 3e-116
 Identities = 348/402 (87%), Gaps = 27/402 (7%)
 Strand=Plus/Plus

Query  85   TACGACTTCGGATCTAATATCAAACAAGATGATCGAGAGGCAATAGATTCCGCAGCTAAA  144
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  338  TACGACTTCGGATCTAATATCAAACAAGATGATCGAGAGGCATTAGATTCCGCAGCTAAA  397

Query  145  CTTGTTGCTGG-CTTTTTGTTG-GCTGAACCACTAAATGTCGTAAAAGGAGTAGGAGGTT  202
             |||||||||  |||||  ||| | ||||||||||||||||||||||||||||||||| |
Sbjct  398  TTTGTTGCTGATCTTTTA-TTGCG-TGAACCACTAAATGTCGTAAAAGGAGTAGGAGGCT  455

Query  203  TTGGCATGGGTGCAGTAGTTGCTCTCCAGTTTGCAACAAATTGTGCTCTTGGACATTATC  262
            ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  456  TTGGCATGGGTGCAGTAGTAGCTCTCCAATTTGCAACAAATTGTGCTCTTGGACATTATC  515

Query  263  CTTTAAGTCCCCGAGTTGTTGTTGGAATTAATGGATGGCTGTCTATT--G-----C----  311
            || ||| ||||||||||||||||||||||||||| ||||| ||||||  |     |    
Sbjct  516  CTATAAATCCCCGAGTTGTTGTTGGAATTAATGGGTGGCTTTCTATTACGGGGAGCATAA  575

Query  312  C--G--GTATAGAATCTACAGTTGGGGCTGTAGCTCGTGCTGCG-CAACAGAAAATCTTA  366
            |  |  | ||||||| |||||||||||||||||||||||||||  || ||||||||||| 
Sbjct  576  CAAGCAGCATAGAATATACAGTTGGGGCTGTAGCTCGTGCTGCATCA-CAGAAAATCTT-  633

Query  367  TTTT-CACGTCCAACAGACGA-TCGTATACTTCCTTACACCAGTGAAAAAGAGGTTGTTG  424
            |||| |||||  | |||| || |||| |||||||||||||| ||||| |||| |||||||
Sbjct  634  TTTTACACGTGGAGCAGA-GAATCGTCTACTTCCTTACACCCGTGAAGAAGAAGTTGTTG  692

Query  425  ACTCCCTTA-ACGAGGCTGGCTTCGGAGAAGTCTACTTCTTA  465
            | ||||||| | |||||||| || ||||| ||||  ||||||
Sbjct  693  AGTCCCTTAGA-GAGGCTGGTTTTGGAGACGTCTTTTTCTTA  733


> AT1G52460.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein 
| chr1:19549331-19551282 FORWARD LENGTH=828
Length=828

 Score = 67.6 bits (36),  Expect = 1e-10
 Identities = 42/45 (93%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  38   AAGGAGACCAAAGGGTCACTATAGTATGGCTGCATGATAAGGATG  82
            ||||||| || || |||||||||||||||||||||||||||||||
Sbjct  87   AAGGAGAGCATAGAGTCACTATAGTATGGCTGCATGATAAGGATG  131



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5