BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914011
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49340.2 | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- a... 1024 0.0
AT1G51040.1 | Symbols: | Protein kinase superfamily protein | ... 878 0.0
> AT1G49340.2 | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3-
and 4-kinase family protein | chr1:18252355-18264462 FORWARD
LENGTH=6582
Length=6582
Score = 1024 bits (554), Expect = 0.0
Identities = 634/671 (94%), Gaps = 11/671 (2%)
Strand=Plus/Plus
Query 579 TGGAGTACTCCCAACTGGTGCGGAGAGGGGCATAATTGAGGTTGTGCCTAATACACGAAG 638
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 5418 TGGAGTACTCCCAACTGGTGCGGAAAGGGGCATAATTGAGGTGGTGCCTAATACAAGAAG 5477
Query 639 CAGAAGTCAAATGGGTGAAACAACCGACGGGGGTTTGTATGAGATTTTTCAACAAGACTA 698
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 5478 CAGAAGTCAAATGGGTGAGACTACTGACGGGGGTTTGTATGAGATTTTTCAACAAGACTA 5537
Query 699 TGGACCCGTTGGCTCAACCACATTTGAAACAGCACGAGAGAACTTCCTCATCAGCAGTGC 758
||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 5538 TGGACCCGTCGGCTCAACCACCTTTGAAACAGCACGGGAGAACTTCCTCATCAGTAGTGC 5597
Query 759 TGGTTATGCAGTGGCTAGTCTTTTACTCCAGCCCAAAGACAGACACAACGGAAATCTCCT 818
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 5598 CGGTTATGCAGTGGCTAGTCTTTTACTCCAGCCCAAAGACAGACACAATGGAAATCTCCT 5657
Query 819 CTTCGACGAC-TCGGGAAGACTTGTCCACATCGACTTTGGTTTCATTTTGGAAACTTCAC 877
|||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 5658 CTTCGATGACGT-GGGAAGACTTGTCCACATCGACTTTGGTTTCATTTTGGAAACTTCGC 5716
Query 878 CTGGTGGAAACATGCGGTTTGAGAGTGCTCATTTCAAACTGAGCCATGAAATGACTCAGT 937
||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 5717 CTGGTGGGAACATGCGATTCGAGAGTGCTCATTTCAAACTGAGCCACGAAATGACTCAGT 5776
Query 938 TACTAG-------G--TGTTATGAAAAGCAAAACATGGCATCAGTTTGTGAGCTTGTGCG 988
| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5777 TGCTAGATCCCTCGGGTGTTATGAAAAGCAAAACATGGCATCAGTTTGTGAGCTTGTGCG 5836
Query 989 TCAAGGGGTACTTAGCTGCTCGGCGGCAGATGGACGGAATCATCAGCACGGTGCAAATGA 1048
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 5837 TCAAGGGGTACTTAGCTGCTCGGCGGCAGATGGATGGAATCATCAGCACGGTGCAAATGA 5896
Query 1049 TGCTAGAAAGTGGATTGCCTTGCTTTAGCAGAGGAGATCCAATTGGTAATCTTAGGAAAA 1108
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5897 TGCTAGAAAGTGGGTTGCCTTGCTTTAGCAGAGGAGATCCAATTGGTAATCTTAGGAAAA 5956
Query 1109 GATTTCATCCAGAAATGAGCGAACGTGAAGCTGCACACTTCATGATTCATGTCTGTACCG 1168
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 5957 GATTTCACCCAGAAATGAGCGAACGTGAAGCTGCACACTTCATGATTCATGTATGTACGG 6016
Query 1169 ACGCATACAACAAGTGGACTACTGCTGGTTACGACTTGATTCAGTATTTGCAACAAGGCA 1228
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 6017 ACGCATATAACAAGTGGACTACTGCTGGATACGACTTGATTCAGTATTTGCAACAAGGCA 6076
Query 1229 TCGAGAAGTAA 1239
|||||||||||
Sbjct 6077 TCGAGAAGTAA 6087
Score = 878 bits (475), Expect = 0.0
Identities = 522/545 (96%), Gaps = 2/545 (0%)
Strand=Plus/Plus
Query 36 GAGGCTAGTTGAAGGGTATCTTCTTAGAGCTACCCAAAGAAGTGACATATTTGCCCATAT 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4824 GAGGCTAGTTGAAGGGTATCTTCTTAGAGCTACCCAAAGAAGTGACATATTTGCCCACAT 4883
Query 96 TCTCATTTGGCATTTGCAGGGTGAGTCTGTTCAGGAGACTCCAAAGGAAGGTTCTATCGA 155
|||||||||||||||||| |||||| ||| ||||| ||||| ||||| |||||||||||
Sbjct 4884 TCTCATTTGGCATTTGCAAGGTGAGGATGTGCAGGAAACTCCGAAGGATGGTTCTATCGA 4943
Query 156 TAAGAATGCGGCATTCCAAGAAATTTTGCCAGAGGTTCGGCAGCATATCATTGATGGTTT 215
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4944 TAAGAATGCGGCATTCCAAGAAATTTTGCCACAGGTTCGGCAGCATATCATTGATGGTTT 5003
Query 216 CAATCCC-ACTGCCTTGGACATGTTCACTAGAGAGTTTGACTTCTTTGACAAGGTTACTT 274
|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5004 CAGCCCCAAC-GCCTTGGACATGTTCACTAGAGAGTTTGACTTCTTTGACAAGGTTACTT 5062
Query 275 CTATTTCTGGGGTGCTATTTCCTCTTCCAAAGGAAGAATGCAGAGCCGGTATTAGAAGGG 334
|||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 5063 CTATATCTGGGGTGTTATTCCCTCTTCCAAAGGAAGAACGCAGAGCCGGTATTAGGAGGG 5122
Query 335 AGTTAGAGAAAATTGAAATGCAAGGAGATGACCTTTATTTGCCTACTGCTCCTAACAAGC 394
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 5123 AGTTGGAGAAAATTGAAATGCAGGGAGATGACCTTTATTTGCCAACTGCTCCTAACAAGC 5182
Query 395 TTGTTAGGAGTATCCGTGTAGACAGTGGAATACCCTTACAATCAGCTGCCAAAGTCCCTA 454
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5183 TTGTTAGGGGTATCCGTGTAGACAGTGGAATACCCTTACAATCAGCTGCCAAAGTCCCTA 5242
Query 455 TCATGATAACTTTTAACGTTATTGATCGTGATGGTGACCACAGTGATGTAAAACCACAAG 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 5243 TCATGATAACTTTTAACGTTATTGATCGTGATGGTGACCACAGTGATGTAAAACCACAGG 5302
Query 515 CTTGCATTTTCAAGGTTGGAGATGATTGCCGGCAAGATGTTCTTGCCCTTCAAGTGATAT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5303 CTTGCATTTTCAAGGTTGGAGATGATTGCCGGCAAGATGTTCTTGCCCTTCAAGTGATAT 5362
Query 575 CTCTT 579
|||||
Sbjct 5363 CTCTT 5367
> AT1G51040.1 | Symbols: | Protein kinase superfamily protein
| chr1:18920658-18923314 FORWARD LENGTH=1578
Length=1578
Score = 878 bits (475), Expect = 0.0
Identities = 581/631 (92%), Gaps = 11/631 (2%)
Strand=Plus/Plus
Query 619 GTTGTGCCTAATACACGAAGCAGAAGTCAAATGGGTGAAACAACCGACGGGGGTTTGTAT 678
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GTTGTGCCAAATACACGAAGCAGAAGTCAAATGGGTGAAACAACCGACGGGGGTTTGTAT 1008
Query 679 GAGATTTTTCAACAAGACTATGGACCCGTTGGCTCAACCACATTTGAAACAGCACGAGAG 738
||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1009 GAGATTTTTCAACAAAACTATGGACTCGTTGGCTCAACCACCTTTGAAACAGCACGAGCG 1068
Query 739 AACTTCCTCATCAGCAGTGCTGGTTATGCAGTGGCTAGTCTTTTACTCCAGCCCAAAGAC 798
||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1069 AACTTCCTCATAAGCAGTGCCGGGTATGCTGTGGCTAGTCTTTTACTCCAGCCCAAAGAT 1128
Query 799 AGACACAACGGAAATCTCCTCTTCGACGAC-TCGGGAAGACTTGTCCACATCGACTTTGG 857
|||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||
Sbjct 1129 AGACACAACGGAAATCTCCTTTTCGATGACGT-GGGAAGACTTGTCCACATCGACTTTGG 1187
Query 858 TTTCATTTTGGAAACTTCACCTGGTGGAAACATGCGGTTTGAGAGTGCTCATTTCAAACT 917
|||||||||||||||||||||||||||||||||| |||| || | |||||||||||||||
Sbjct 1188 TTTCATTTTGGAAACTTCACCTGGTGGAAACATGAGGTTCGAAAATGCTCATTTCAAACT 1247
Query 918 GAGCCATGAAATGACTCAGTT---A---C-T--AGGTGTTATGAAAAGCAAAACATGGCA 968
|||||| |||||||| ||||| | | | |||||||||||||||||||||||||||
Sbjct 1248 GAGCCACGAAATGACCCAGTTGCTAGATCCTTCAGGTGTTATGAAAAGCAAAACATGGCA 1307
Query 969 TCAGTTTGTGAGCTTGTGCGTCAAGGGGTACTTAGCTGCTCGGCGGCAGATGGACGGAAT 1028
||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||| |||
Sbjct 1308 TCAGTTTGTGAGCTTGTGCGTCAAGGGATACTTAGCTGCTCGCCGGTACATGGACGAAAT 1367
Query 1029 CATCAGCACGGTGCAAATGATGCTAGAAAGTGGATTGCCTTGCTTTAGCAGAGGAGATCC 1088
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CATTAGCACGGTGCAAATGATGCTAGAAAGTGGATTGCCTTGCTTTAGCAGAGGAGATCC 1427
Query 1089 AATTGGTAATCTTAGGAAAAGATTTCATCCAGAAATGAGCGAACGTGAAGCTGCACACTT 1148
||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1428 AATAGGTAATCTTAGGAAAAGATTCCACCCAGAAATGAGCGAACGTGAAGCTGCACTCTT 1487
Query 1149 CATGATTCATGTCTGTACCGACGCATACAACAAGTGGACTACTGCTGGTTACGACTTGAT 1208
|||||| |||| |||||||| || || ||||| |||||||||||||| || ||||||||
Sbjct 1488 TATGATTAATGTATGTACCGATGCTTATAACAAATGGACTACTGCTGGATATGACTTGAT 1547
Query 1209 TCAGTATTTGCAACAAGGCATCGAGAAGTAA 1239
||||||||||||||||||| | |||||||||
Sbjct 1548 TCAGTATTTGCAACAAGGCGTTGAGAAGTAA 1578
Score = 621 bits (336), Expect = 5e-177
Identities = 475/542 (88%), Gaps = 10/542 (2%)
Strand=Plus/Plus
Query 43 GTTGAAGGGTATCTTCTTAGAGCTACCCAAAGAAGTGACATATTTGCCCATATTCTCATT 102
|||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 346 GTTGAAGGGTATCTTCTTAGAGCTGCCCAAAGAAGTGACATATTTGCTCATACCCTCATT 405
Query 103 TGGCATTTGCAGGGTGAGTCTGTTCAGG--AGACTCCAAAGGAAGGTTCTATCGATAAGA 160
|||||||| ||||||||||||||| ||| | | | ||| || ||| || |||||||||
Sbjct 406 TGGCATTTACAGGGTGAGTCTGTTGAGGAAATAGT-GAAA-GATGGTGCTTTCGATAAGA 463
Query 161 ATGCGGCATTCCAAGAAATTTTGCCAGAGGTTCGGCAGCATATCATTGATGGTTTCAATC 220
|||| ||||||||||||| ||| |||| ||||||||||||||| |||||||||||| ||
Sbjct 464 ATGCATCATTCCAAGAAATCTTGTCAGACGTTCGGCAGCATATCGTTGATGGTTTCACTC 523
Query 221 CCACTGCCTTGGACATGTTCACTAGAGAGTTTGACTTCTTTGACAAGGTTACTTCTATTT 280
||| |||||| | | |||| ||||||||||||||||||||| ||||| || |||||||
Sbjct 524 CCAAGGCCTTGAATTTTTTCAGTAGAGAGTTTGACTTCTTTGAAAAGGTCACATCTATTT 583
Query 281 CTGGGGTGCTATTTCCTCTTCCAAAGGAAGAATGCAG-AGCCGGTATTAGAAGGGAGTTA 339
|||||| || |||||||||||||||||||| | || ||| |||||||| ||||| ||
Sbjct 584 CTGGGGCATTACTTCCTCTTCCAAAGGAAGAACG-AGTAGCTGGTATTAGGAGGGAATTG 642
Query 340 GAGAAAATTGAAATGCAAGGAGATGACCTTTATTTGCCTACTGCTCCTAACAAGCTTGTT 399
|||||||| ||||||||||||| || |||||| |||| ||||||||||||||||| ||
Sbjct 643 GAGAAAATCAAAATGCAAGGAGAAGATCTTTATCTGCCGACTGCTCCTAACAAGCTCGTC 702
Query 400 AGGAG-TA-TCCGTGTAGACAGTGGAATACCCTTACAATCAGCTGCCAAAGTCCCTATCA 457
||| | || || | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 703 AGG-GTTATTCAG-GTAGACAGTGGAATACCCCTACAATCAGCTGCCAAAGTCCCTATCA 760
Query 458 TGATAACTTTTAACGTTATTGATCGTGATGGTGACCACAGTGATGTAAAACCACAAGCTT 517
||||||| ||||||||| |||||| |||||||||||||| |||||| ||||| |||||||
Sbjct 761 TGATAACCTTTAACGTTGTTGATCTTGATGGTGACCACAATGATGTGAAACCTCAAGCTT 820
Query 518 GCATTTTCAAGGTTGGAGATGATTGCCGGCAAGATGTTCTTGCCCTTCAAGTGATATCTC 577
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 821 GTATTTTCAAGGTTGGAGATGATTGCCGTCAAGATGTTCTTGCCCTGCAAGTGATATCTC 880
Query 578 TT 579
||
Sbjct 881 TT 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5