BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914012
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49350.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1147 0.0
> AT1G49350.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:18264971-18267270 FORWARD LENGTH=1472
Length=1472
Score = 1147 bits (621), Expect = 0.0
Identities = 814/907 (90%), Gaps = 13/907 (1%)
Strand=Plus/Plus
Query 137 GAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTATCACTCGTATATGACACAAATG 196
||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||
Sbjct 332 GAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTGTCCCTTGTATATGACACTAATG 391
Query 197 GAGAAGTTGCTGCT-G-G-TG-T----T-GATGCAGTTGAAAAGTTTCTGACACCTGAGT 247
|||||||||| ||| | | || | | ||||| |||||||| ||| | ||||||||||
Sbjct 392 GAGAAGTTGCCGCTGGTGTTGCTGGCGTGGATGCCGTTGAAAATTTTTTAACACCTGAGT 451
Query 248 GGATCCAGCGGTTTAAATACAACATAAGCTCTGCTCCTGTTCTTATGGTGGATGCAAATC 307
|||||||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 452 GGATCCAGCGGTTTGAATACAACATAAGCTCTGCTCGTCTTCTTATGGTAGATGCAAATC 511
Query 308 TTACCACTCTTGCTTTGGAAGCATCCTGTAAATTGGCTGTAGAGTTCAATGTTCCTGTAT 367
||| | ||||||||||||||||||| || |||||||||| ||||| || |||||||||||
Sbjct 512 TTAGCTCTCTTGCTTTGGAAGCATCTTGCAAATTGGCTGCAGAGTCCAGTGTTCCTGTAT 571
Query 368 GGTTTGAGCCTGTGTCAGTCACAAAGTCTCAGAGAATCGCCTCAGTTGCCAAGTATATAA 427
|||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||||||| |||
Sbjct 572 GGTTTGAGCCAGTGTCAGTCACTAAGTCACAGAGGATCGCCTCAATTGCCAAGTATGTAA 631
Query 428 CAGTAGTGTCCCCAAACCAAGACGAACTCATAGCGATGGCAAACGCTCTCTGCGCCAAGA 487
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 632 CAATAGTGTCCCCAAACCAAGACGAACTCATAGCAATGGCAAACGCTCTCTGCGCCAAGA 691
Query 488 ATTTGTTCCACCCCTTTAAATCAGAAGAAAGTAAGCTTTCCACCGAAGGCATATTCCGCG 547
||||||| || ||||||| |||||| |||| ||||||||| | |||| || ||||| |
Sbjct 692 ATTTGTTTCATCCCTTTAGATCAGACGAAAATAAGCTTTCTATTGAAGATATGTTCCGTG 751
Query 548 CGCTAAAACCAGCCA-TTTGGATTCTCCTTGAAAATGGTATTAAAGTAGTTATTGTAACC 606
| ||||| ||||| | ||||| |||||||| |||||||| ||||||||||||| |||||
Sbjct 752 CACTAAAGCCAGCTATTTTGG-TTCTCCTTAAAAATGGTGTTAAAGTAGTTATCGTAACT 810
Query 607 CTTGGATCCAATGGAGCTCTCCTATGCTCCAAGGGAAACCCGAAAAAGGCTCTGAACATA 666
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 811 CTCGGCTCCAATGGAGCTCTCCTATGTTCCAAGGGAAACCCGAAAAAGGCTCTGAACATA 870
Query 667 AACCGAAAGTTTATCAGAAGTGGAGAGATCTTCAAAAGGGTACAATCTGTATGTCCACCA 726
|| |||||||| | |||||||||||| |||||||||| ||||| ||||||||| |||||
Sbjct 871 GACAGAAAGTTTCTAAGAAGTGGAGAGGTCTTCAAAAGAGTACAGTCTGTATGTTCACCA 930
Query 727 AACCGGTTTTCTGAATTATTATCGAATCGCAACCCGAGTCTTTTCGCAATGCATTTCCCA 786
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 931 AACCGGTTTTCTGAATTGGGATCGAATCGCAGCCCGAGTCTTTTCGCAATGCATTTCCCA 990
Query 787 ACCATCCCAGCCAAAGTCAAGAAACTCACTGGTGCAGGTGATTGTCTGGTAGGCGGGACA 846
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 991 ACCATCCCAGCCAAAGTCAAGAAGCTGACTGGTGCAGGTGATTGTCTGGTAGGCGGGACA 1050
Query 847 GTCGCATCGCTAAGCGATGGTTTAGATCTAATTCAAAGTTTAGCAGTTGGCATTGCCTCG 906
|| ||||||||||||||||| ||||||||||| || |||||||| ||||||||||| |||
Sbjct 1051 GTTGCATCGCTAAGCGATGGGTTAGATCTAATCCAGAGTTTAGCGGTTGGCATTGCGTCG 1110
Query 907 GCTAAAGCAGCGGTTGAGTCAGACGATAATGTGCCTCCTGAGTTCAATTTGGATCTTGTT 966
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 1111 GCGAAAGCAGCGGTTGAGTCAGATGATAATGTGCCTCCTGAGTTCAAGTTGGATCTTAT- 1169
Query 967 ACC-GATGATGCGGAGTTGGTATACTATGGCGCGAAGATGTTGATGGTTCATCAGTCGAT 1025
| | | |||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 1170 ATCTGGTGATGCAGAGTTGGTATACAATGGCGCTAAGATGTTGATGGTTCACCAGTCGAT 1229
Query 1026 GCTATGA 1032
|||||||
Sbjct 1230 GCTATGA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5