BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914016

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49420.1 | Symbols:  | Heavy metal transport/detoxification ...   673    0.0  


> AT1G49420.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr1:18287859-18288650 REVERSE LENGTH=570
Length=570

 Score =  673 bits (364),  Expect = 0.0
 Identities = 488/545 (90%), Gaps = 19/545 (3%)
 Strand=Plus/Plus

Query  1    ATGAAATTGAAGACGGCGCCTCTTAATTCCGAAAAGAATCTCTCAAAAGTCAAGAATGCT  60
            |||||||||||||||| |||||||| |  |||||||||| |||| ||||||||||| |||
Sbjct  34   ATGAAATTGAAGACGGAGCCTCTTAGTAACGAAAAGAATTTCTCGAAAGTCAAGAAGGCT  93

Query  61   CTTTGC-AGCTTACCTCAAGTAAGAGACCAAAAGTTCGATGAAGAAAACAACACAGTGAC  119
            |||| | ||| |||||||||||||||||||||||||||| ||||||| |||||| || ||
Sbjct  94   CTTT-CGAGCATACCTCAAGTAAGAGACCAAAAGTTCGAAGAAGAAACCAACACGGTCAC  152

Query  120  AATCAAAGTGGTTTGTTGCAGTCCTGAGAAAGTCATGGACAAACTCTGTTCCAAAGGACG  179
            ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  153  AATCAAAGTGGTTTGCTGCAGTCCTGAGAAAGTGATGGACAAACTCTGTTCCAAAGGACG  212

Query  180  TGGAGCTATTAAGCTCATCGAAACCATCGATCCGCCCAAACCTGCGGCCCAAAAGCCCAA  239
            |||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||
Sbjct  213  TGGAGCTATTAAGCTCATCGAAACCATCGATCCGGCCAAACATGTGGCTCAAAAGCCCAA  272

Query  240  AGAACCTGAGAAGCCCAAAGAAGCTGAAAAACCTAAAGAAGCAGAGAAGCCCAAACCAGC  299
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  273  AGAACCTGAGAAGCCCAAAGAAGCTGAAAAACCTAAAGAACCAGAGAAGCCCAAACCAGC  332

Query  300  A-C--C---AGCTCAAGCCGATCCAAGTTCTCAACGCGTGATACATGGGTATAATCCAGC  353
            | |  |   |||||||| |||||||||||||||||| |||| |||||||||||||||| |
Sbjct  333  AGCAGCTCCAGCTCAAGGCGATCCAAGTTCTCAACGGGTGACACATGGGTATAATCCACC  392

Query  354  GTCGATGATGGGCCAGCCGGTGCCTTGGTCTGATGGGCCTAACTACGGATGGTCCCGACC  413
            | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  393  GCCGATGATGGGCCATCCGGTGCCTTGGTCTGATGGGCCTAACTACGGATGGTCCCGACC  452

Query  414  CAATGGATATGATGAAAGGCCAATTTTTGATAGCTATGGAAGTTGGCGACCACCACCATT  473
            |||||| ||||||||||| || ||||   ||||||| ||| |||||| ||||||||||| 
Sbjct  453  CAATGGGTATGATGAAAGACCCATTTACAATAGCTACGGAGGTTGGCAACCACCACCATC  512

Query  474  GCAATATGGATATGGTAGCAGATCACATTACCAAGAAGAATCG-CCGT---GCTCCATCA  529
            ||||||||| |  ||   ||||||||||||| |||| ||| |  ||||   |||||||||
Sbjct  513  GCAATATGG-T--GG---CAGATCACATTACGAAGAGGAA-CAACCGTCTTGCTCCATCA  565

Query  530  TGTGA  534
            |||||
Sbjct  566  TGTGA  570



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5