BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914024

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03200.1 | Symbols:  | Eukaryotic aspartyl protease family p...   211    5e-54
  AT5G35735.1 | Symbols:  | Auxin-responsive family protein | chr...   145    5e-34


> AT2G03200.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr2:966451-967918 REVERSE LENGTH=1468
Length=1468

 Score =  211 bits (114),  Expect = 5e-54
 Identities = 189/224 (84%), Gaps = 10/224 (4%)
 Strand=Plus/Plus

Query  347   TCC-AAGTTGA-TTTTCATTTTAGAGGTGCGGATTTGGAGCTTCCCGGaaaaaaaTTCAT  404
             ||| ||| ||| ||||||||||| |||||| |||||||||||||||||| | || | |||
Sbjct  1197  TCCTAAGATGATTTTTCATTTTAAAGGTGCTGATTTGGAGCTTCCCGGAGAGAACTACAT  1256

Query  405   GGTTGCGGATTCAATCACCAGCGTTTTGTGTTTGGCCATGGGAAGTTCTAACGGAATGTC  464
             ||| |||||||||| |||| ||||||||||||||||||||||||||||||| || |||||
Sbjct  1257  GGTGGCGGATTCAAGCACCGGCGTTTTGTGTTTGGCCATGGGAAGTTCTAATGGGATGTC  1316

Query  465   TGTTTTTGGAAATGCTCAGCATCTGAATTATAACGGGA-TG-ATCG-TCTTGAGAAA-A-  519
             | |||| ||||||| ||| || | ||||| ||| |  | |  || | |||||||||| | 
Sbjct  1317  TATTTTCGGAAATGTTCAACAGCAGAATTTTAATGT-ACTTCAT-GATCTTGAGAAAGAA  1374

Query  520   -CGGTGTCATGTGTTCCCACTAAATGTGGAAAATTGTAGATTTT  562
              ||||||| | |||||||||| ||||||||||||||||||||||
Sbjct  1375  ACGGTGTCGTTTGTTCCCACTGAATGTGGAAAATTGTAGATTTT  1418


> AT5G35735.1 | Symbols:  | Auxin-responsive family protein | chr5:13900752-13902997 
REVERSE LENGTH=1439
Length=1439

 Score =  145 bits (78),  Expect = 5e-34
 Identities = 142/173 (82%), Gaps = 3/173 (2%)
 Strand=Plus/Minus

Query  104  CGGAGATTAGTCCTACCACTCGATCTCATATTATCTCCCGTCCTTTTATTCCTCT-AGGA  162
            |||| || | |||||||||||||||||||||||||||| |   ||| ||  |||  ||||
Sbjct  632  CGGAAATCAATCCTACCACTCGATCTCATATTATCTCCTGAGGTTTGATGACTCGCAGGA  573

Query  163  ACACCATTAACAACAAGTCCTACCTGCCAA-GACTGGTTGTTCGTGATCAAATTCGGTGG  221
            ||||| || |||||| |||| ||||||||| | |||||||  |||||||| |||||| | 
Sbjct  572  ACACCGTTGACAACAGGTCCCACCTGCCAAAG-CTGGTTGGCCGTGATCAGATTCGGAGA  514

Query  222  TAACTCAAGAGTTGTGAAGATGGTAGCCTCCCCATTGACCAGACTCGCGGAGA  274
             |||||||||||||  ||||| ||| |||| ||| |||||||| |||||||||
Sbjct  513  CAACTCAAGAGTTGCAAAGATCGTAACCTCGCCACTGACCAGAGTCGCGGAGA  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5