BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914026
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11590.1 | Symbols: | Plant invertase/pectin methylesterase... 1332 0.0
AT4G03930.1 | Symbols: | Plant invertase/pectin methylesterase... 1323 0.0
AT3G27980.1 | Symbols: | Plant invertase/pectin methylesterase... 891 0.0
AT1G36700.1 | Symbols: | pseudogene, hypothetical protein | ch... 569 2e-161
> AT1G11590.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr1:3892580-3894677 FORWARD LENGTH=1686
Length=1686
Score = 1332 bits (721), Expect = 0.0
Identities = 1020/1164 (88%), Gaps = 22/1164 (2%)
Strand=Plus/Plus
Query 106 ATAACAACGGT-G--ATCGGGGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAA 159
||||||| ||| | || || ||| |||||| ||| ||| ||||||||||||||||||
Sbjct 91 ATAACAATGGTGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAA 150
Query 160 AA-TATTTTGTTGGAGCTCAA-GAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTG 217
|| | ||||||||||||| || | |||| || ||||||||||||||||| | | ||||||
Sbjct 151 AACT-TTTTGTTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTG 208
Query 218 AGTTATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTG 277
| ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 209 ACTTATTGATCATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGTTATGATTGGTG 268
Query 278 TGATGGAAGACACAAAACTACTTGAGCAGATGGGGAATGATATGCTTGGTGTGAAGGAGG 337
||||||| || ||||||| || |||| |||||| ||||||| ||||||||||||||||||
Sbjct 269 TGATGGATGATACAAAACAACATGAGGAGATGGAGAATGATTTGCTTGGTGTGAAGGAGG 328
Query 338 ACACAAATCTATTTGAAGAGATGATGGAGTCGGCAAAAAATAGGATGATCCGTTCAGTGG 397
||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 329 ACACAAAACTATTTGAGGAGATGATGGAGTCGACAAAAGATAGGATGATCCGTTCGGTGG 388
Query 398 AGGAACTTTTAGGAGGAGAA-AGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTGG 456
||||||| |||||||||||| || ||||| ||| |||||||| |||||||||||||||
Sbjct 389 AGGAACTCTTAGGAGGAGAATTTCC-TAATCGTGGATCTTACGAGAACGTCCACACTTGG 447
Query 457 CTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTAT 516
|||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 448 CTCAGTAGCGTTCTTACTAGTTACATCACATGTATCGACGAAATTGGTGAAGGTGCCTAT 507
Query 517 AAACGTCGGGTCGAGCCAGAGCTTGAGGACCTTATTTCTAGGGCAAGAGTAGCTTTGGCA 576
||||| || ||||||||| ||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 508 AAACGCCGTGTCGAGCCAAAGCTTGAAGACCTCATTTCTAGGGCAAGAATAGCTTTGGCT 567
Query 577 ATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATGGC 636
| ||||| |||||||| ||||||||| |||||||||||| |||||| || ||||| ||
Sbjct 568 CTCTTTATCTCCATTTCACCGAGAGACAACACCGAACTTATCTCGGTGATTCCCAATAGC 627
Query 637 CCGTCTTGGTTA-TCCAACGTTGACAAAAAATG-TCTATATCTCAATCCTGAGGTTCTAA 694
|| ||||||||| ||| | |||||||| ||| | ||||||||||||| |||||| |||||
Sbjct 628 CCTTCTTGGTTATTCC-ATGTTGACAAGAAA-GATCTATATCTCAATGCTGAGGCTCTAA 685
Query 695 AGAAGAATGCCGATGTTGTGGTCGCAAAGGATGGGAGCGGACATTACAACACAGTGAATG 754
|||||| ||| |||||||||||||| |||||||||| |||| | |||| |||||||||||
Sbjct 686 AGAAGATTGCTGATGTTGTGGTCGCGAAGGATGGGACCGGAAAGTACAGCACAGTGAATG 745
Query 755 CGGCCATTGCAGCGGCACCTGAATACAACCGAAAGAGATTTGTCATCTATATAAAGACTG 814
|||||||||||||||||||| || ||| || ||||||||| ||||||||||||||||| |
Sbjct 746 CGGCCATTGCAGCGGCACCTCAACACAGCCAAAAGAGATTCGTCATCTATATAAAGACAG 805
Query 815 GCGTCTATGATGAAATCGTCCG-CATTGGGATTACGAAAACCAATTTAACTCTCATCGGT 873
|| | |||||||||||||| || ||||| || ||||||| ||||||||||||| || |||
Sbjct 806 GCATTTATGATGAAATCGT-CGTCATTGAGAATACGAAACCCAATTTAACTCTTATAGGT 864
Query 874 GATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGTTG-TAACGTTGGTAGATCAAC 932
||||||||||||| ||||||||||||| |||||||||| || || | || |||| |||
Sbjct 865 GATGGTCAAGATTTAACCATCATCACGAGCAATTTAAG-TGCTAGCAATGTTAGAAGAAC 923
Query 933 GTTCTACACCGCAACTGTTGCTTCTAATGGTGATGGTTTCATCGGAATAGACATGTGCTT 992
|||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 924 GTTCAACACCGCAACTGTTGCTTCTAATGGTAATGGATTCATCGGAGTAGACATGTGCTT 983
Query 993 CAGGAACACGGCCGGACCGACAAAGGGACAAGCCGTTGCCCTCCGTGTGAGTGGTGATAT 1052
| | ||||||||||| ||| |||| |||| ||| ||||||||||||||||||||||||||
Sbjct 984 CCGAAACACGGCCGGGCCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATAT 1043
Query 1053 GTCCGTCATTTACCGATGTCGTATCGAGGGGTATCAGGATACGTTGTATCCTCACCAAT- 1111
|||||||||||| |||| ||| ||||||| ||||||||| | |||||||||||| | |
Sbjct 1044 GTCCGTCATTTATAGATGCCGTGTCGAGGGATATCAGGATGCCTTGTATCCTCAC-AGTG 1102
Query 1112 ACCGCCAATTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTATCTGTGGAAAGG 1171
||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || |
Sbjct 1103 ACCGCCAGTTTTATAGAGAGTGCTTTATTACCGGCACTGTAGATTTCATTTGTGGGAACG 1162
Query 1172 CCGTGGCTGTCTTCCAATTTTGCCAAATTGTAGCAAGACAACCGAGGAGGGGGCAGAGCA 1231
| ||||| ||||| ||||| ||||| ||||||||||||||||| | || |||||||||||
Sbjct 1163 CGGTGGCGGTCTTTCAATTCTGCCAGATTGTAGCAAGACAACCTAAGATGGGGCAGAGCA 1222
Query 1232 ATGTGATAACCGCTCAGTCACGCG 1255
|||| |||||||||||||||||||
Sbjct 1223 ATGTCATAACCGCTCAGTCACGCG 1246
Score = 257 bits (139), Expect = 2e-67
Identities = 216/253 (85%), Gaps = 6/253 (2%)
Strand=Plus/Plus
Query 1267 TGGAGGA-AGTATTCAACAGTTGTGGTTCTACAATCTTTTATCGGTGATTTAGTTGATCC 1325
||||||| | | ||||||||| | ||| | || ||||| ||||||||||||||||||||
Sbjct 1348 TGGAGGATA-TTTTCAACAGTCGCAGTTATGCAGTCTTTCATCGGTGATTTAGTTGATCC 1406
Query 1326 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTATCAACTCTCTACTACGGCGAATA 1385
||| |||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||
Sbjct 1407 CGCTGGCTGGACTCCTTGGGAAGGAGAAACTGGTTTGTCAACTCTCCACTACCGCGAATA 1466
Query 1386 TCAAAACATGGGCCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGGTTTAGAGT 1445
|||||||| ||| ||||||||||||||||||| |||||| |||||| |||| |||| |||
Sbjct 1467 TCAAAACAGGGGTCCAGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGCTTTAAAGT 1526
Query 1446 TCTTACGGATCCTAA-CGAAGCCGCAAAATTCACTGTTAGC-AAGCTATTAGATGGAGAA 1503
| | | |||||||| | | || || |||||||||| ||| ||||| ||||||||||||
Sbjct 1527 TATGAAAGATCCTAAAC-AGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAA 1584
Query 1504 TCGTGGTTGAAAG 1516
| ||||||||||
Sbjct 1585 ACTTGGTTGAAAG 1597
> AT4G03930.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:1870422-1872387 FORWARD LENGTH=1575
Length=1575
Score = 1323 bits (716), Expect = 0.0
Identities = 1023/1169 (88%), Gaps = 30/1169 (3%)
Strand=Plus/Plus
Query 106 ATAACAACGGT-G--ATCGGGGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAA 159
||||||| ||| | || || ||| |||||| ||| ||| |||||||| |||||||||
Sbjct 37 ATAACAATGGTGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACACTCATGTCAA 96
Query 160 AA-TATTTTGTTGGAGCTCAAGA-GGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTG 217
|| | ||||||||||||| |||| | | |||||||||||||||||||| | | ||||||
Sbjct 97 AACT-TTTTGTTGGAGCTTAAGACAGCT-TCCTCGTCACTCTCGGAGATTAGACGTCGTG 154
Query 218 AGTTATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTG 277
| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 155 ACTTATTGATCATCGTTTTGAAGAATTCCGTGCGGAAGATCGACATGGCTATGATTGGTG 214
Query 278 TGATGGAAGACACAAAACTACTTGAGCAGATGGGGAATGATATGCT-TGGTGTGAAGGAG 336
|||||||||| ||||||| || |||| |||||| |||||||| ||| | || ||||||||
Sbjct 215 TGATGGAAGATACAAAACAACATGAGGAGATGGAGAATGATAAGCTAT-GTTTGAAGGAG 273
Query 337 GACACAAATCTATTTGAAGAGATGATGGAGTCGGCAAAAAATAGGATGATCCGTTCAGTG 396
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 274 GACACAAATCTATTTGAGGAGATGATGGAGTCGGCAAAAGATAGGATGATCCGTTCAGTG 333
Query 397 GAGGAACTTTTAGGAGGAGAA-AGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTG 455
|||||||| |||||||||||| |||| ||||||| |||||||||||| ||||||||||
Sbjct 334 GAGGAACTCTTAGGAGGAGAATTCCCTT-ATCTTGGATCTTACGAAAACATCCACACTTG 392
Query 456 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTA 515
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 393 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGACGGTGCCTA 452
Query 516 TAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTTATTTCTAGGGCAAGAG-TAGCTTTGG 574
||||||||||||||||||| ||||| | ||||| ||||||| ||||| || |||||||||
Sbjct 453 TAAACGTCGGGTCGAGCCACAGCTTCAAGACCTCATTTCTAAGGCAA-AGGTAGCTTTGG 511
Query 575 CAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATG 634
| ||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct 512 CTCTTTTTATCTCCATTTCGCCGAGAGACAACACCGAACTTAACTCGGTGGTTCCCAATA 571
Query 635 GCCCGTCTTGGTTATC-CAACGTTGACAAAAAATG-TCTATATCTCAATCCTGAGGTTCT 692
|||||||||||||||| || |||||||| ||| | ||||||||||||| |||||| |||
Sbjct 572 GCCCGTCTTGGTTATCTCAT-GTTGACAAGAAA-GATCTATATCTCAATGCTGAGGCTCT 629
Query 693 AAAGAAGAATGCCGATGTTGTGGTCGC-AAAGGATGGGAGCGGACATTACAACACAGTGA 751
||| |||| |||||||||||||||||| |||| |||||| |||| | |||||||||||||
Sbjct 630 AAAAAAGATTGCCGATGTTGTGGTCGCGAAAG-ATGGGACCGGAAAGTACAACACAGTGA 688
Query 752 ATGCGGCCATTGCAGCGGCACCTGAATACAACCGA-AAGAGATTTGTCATCTATATAAAG 810
|||||||||||||||| |||||| || ||| || | |||||||| ||||||||||||||
Sbjct 689 ATGCGGCCATTGCAGCAGCACCTCAACACAGCC-ACAAGAGATTCATCATCTATATAAAG 747
Query 811 ACTGGCGTCTATGATGAAATCGTCCGC-ATTGGGATTACGAAAACCAATTTAACTCTCAT 869
|| ||| | ||||||||||||||| || |||| || ||||||| ||||||||||||| ||
Sbjct 748 ACAGGCATTTATGATGAAATCGTC-GCCATTGAGAATACGAAACCCAATTTAACTCTTAT 806
Query 870 CGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGTTG-TAACGTTGGTAGAT 928
||||||||||||||||||||||||||||||||||||||||| | || | || ||||
Sbjct 807 AGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGC-GCTAGCAATGTTAGAA 865
Query 929 CAACGTTCTACACCGCAACTGTTGCTTCTAATGGTGATGGTTTCATCGGAATAGACATGT 988
|||||||||||| |||||| |||||||||||||| | || ||||||||| |||||||||
Sbjct 866 GAACGTTCTACACTGCAACTTTTGCTTCTAATGGTAAAGGATTCATCGGAGTAGACATGT 925
Query 989 GCTTCAGGAACACGGCCGGACCGACAAAGGGACAAGCCGTTGCCCTCCGTGTGAGTGGTG 1048
||||| | ||||||| ||| ||| |||| |||| ||| ||||||||||||||||||||||
Sbjct 926 GCTTCCGAAACACGGTCGGGCCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTG 985
Query 1049 ATATGTCCGTCATTTACCGATGTCGTATCGAGGGGTATCAGGATACGTTGTATCCTCACC 1108
||||||||||||||||| |||||||| ||||||| ||||||||| | ||||||||||||
Sbjct 986 ATATGTCCGTCATTTACAGATGTCGTGTCGAGGGATATCAGGATGCCTTGTATCCTCAC- 1044
Query 1109 A-ATACCGCCAATTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTATCTGTGGA 1167
| | ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1045 ATAGACCGCCAGTTTTATAGGGAGTGCTTTATTACCGGTACTGTAGATTTCATTTGTGGA 1104
Query 1168 AAGGCCGTGGCTGTCTTCCAATTTTGCCAAATTGTAGCAAGACAACCGAGGAGGGGGCAG 1227
|| || | ||| || || ||||| ||||| |||||||||||||| || | | ||||||
Sbjct 1105 AACGCAGCGGCGGTATTTCAATTCTGCCAGATTGTAGCAAGACAGCCTAATATGGGGCAA 1164
Query 1228 AGCAATGTGATAACCGCTCAGTCACGCGA 1256
|||||| | ||||||||||| ||||||||
Sbjct 1165 AGCAATTTCATAACCGCTCAATCACGCGA 1193
Score = 259 bits (140), Expect = 5e-68
Identities = 226/267 (85%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 1267 TGGAGGA-AGTATTCAACAGTTGTGGTTCTACAATCTTTTATCGGTGATTTAGTTGATCC 1325
||||||| | | ||||||||| | |||||| || ||||| ||||||||||||||||||||
Sbjct 1294 TGGAGGATA-TTTTCAACAGTCGCGGTTCTGCAGTCTTTCATCGGTGATTTAGTTGATCC 1352
Query 1326 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTATCAACTCTCTACTACGGCGAATA 1385
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 1353 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTGTCAACTCTCCACTACCGCGAATA 1412
Query 1386 TCAAAACATGGGCCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGG-TTTAGAG 1444
|||||| | ||| || |||||||||||||||| |||||| |||||| | ||| |||| ||
Sbjct 1413 TCAAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTC-GGGCTTTAAAG 1471
Query 1445 TTCTTACGGATCCTAA-CGAAGCCGCAAAATTCACTGTTAGC-AAGCTATTAGATGGAGA 1502
|| | | |||||||| | | || || |||||||||| ||| ||||| |||||||||||
Sbjct 1472 TTATGAAAGATCCTAAAC-AGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGA 1529
Query 1503 ATCGTGGTTGAAAGCAAGTGGAGTTCC 1529
| | ||| | |||| |||| || ||||
Sbjct 1530 AACTTGGCTAAAAGAAAGTCGAATTCC 1556
> AT3G27980.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:10393904-10395861 FORWARD LENGTH=1494
Length=1494
Score = 891 bits (482), Expect = 0.0
Identities = 708/815 (87%), Gaps = 24/815 (3%)
Strand=Plus/Plus
Query 447 CCACACTTGGCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGA 506
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 315 CCACACTTGGCTTAGTAGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGA 374
Query 507 AGGTGCCTATAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTTATTTCTAGGGCAAGAGT 566
||||||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 375 AGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTTGAAAACCTCATTTCTAGGGCAAGAGT 434
Query 567 AGCTTTGGCAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGT 626
|| |||||| ||||||| |||||||| | ||||||| |||||||||||| |||||| |
Sbjct 435 AGTTTTGGCTCTTTTTATCTCCATTTCACTGAGAGACAACACCGAACTTATCTCGGTGAT 494
Query 627 TTCCAATGGCCCGTCTTGGTTA-TCCAACGTTGACAAAAAATG-TCTATATCTCAATCCT 684
| |||||||||| ||||||||| ||| | |||||||| ||| | |||||||||||| |
Sbjct 495 TCCCAATGGCCCTTCTTGGTTATTCC-ATGTTGACAAGAAA-GATCTATATCTCAA---T 549
Query 685 GAGGTTCTAAAGAAGAATGCCGATGTTGTGGTCGCAAAGGATGGGAGCGGACATTACAAC 744
| || | ||| ||| |||||||||||||| |||||||||| |||| | |||| |
Sbjct 550 ---G--CT---G-AGATTGCTGATGTTGTGGTCGCGAAGGATGGGACCGGAAAGTACAGC 600
Query 745 ACAGTGAATGCGGCCATTGCAGCGGCACCTGAATACAACCGAAAGAGATTTGTCATCTAT 804
|||||||||||||||||||||||||||||| || ||| || ||||||||| |||||||||
Sbjct 601 ACAGTGAATGCGGCCATTGCAGCGGCACCTCAACACAGCCAAAAGAGATTCGTCATCTAT 660
Query 805 ATAAAGACTGGCGTCTATGATGAAATCGTCCG-CATTGGGATTACGAAAACCAATTTAAC 863
|||||||| ||| | |||||||||||||| || ||||| || ||||||| ||||||||||
Sbjct 661 ATAAAGACAGGCATTTATGATGAAATCGT-CGTCATTGAGAATACGAAACCCAATTTAAC 719
Query 864 TCTCATCGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGTTG-TAACGTTG 922
||| || |||||||||||||||| |||||||||||| ||||||||||| | || | ||
Sbjct 720 TCTTATAGGTGATGGTCAAGATTTAACCATCATCACAGGCAATTTAAG-CGCTAGCAATG 778
Query 923 GTAGATCAACGTTCTACACCGCAACTGTTGCTTCTAATGGTGATGGTTTCATCGGAATAG 982
|||| ||||| | |||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct 779 TTAGAAGAACGTACAACACCGCAACTGTTGCTTCTAATGGTAATGGATTCATCGGAGTAG 838
Query 983 ACATGTGC-TTCAGGAACACGGCCGGACCGACAAAGGGACAAGCCGTTGCCCTCCGTGTG 1041
|||||||| ||| | ||||||||||||||| |||| |||| ||| |||||||||||||||
Sbjct 839 ACATGTGCTTTC-GAAACACGGCCGGACCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTG 897
Query 1042 AGTGGTGATATGTCCGTCATTTACCGATGTCGTATCGAGGGGTATCAGGATACGTTGTAT 1101
||||||||||||||||||||||| |||||||| ||||||| ||||||||| | ||||||
Sbjct 898 AGTGGTGATATGTCCGTCATTTATAGATGTCGTGTCGAGGGATATCAGGATGCCTTGTAT 957
Query 1102 CCTCACCAAT-ACCGCCAATTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTAT 1160
||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCTCA-TAGTGACCGCCAGTTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTAT 1016
Query 1161 CTGTGGAAAGGCCGTGGCTGTCTTCCAATTTTGCCAAATTGTAGCAAGACAACCGAGGAG 1220
|||||||| || ||||| ||||| ||||| ||||| |||||||||||||| || | ||
Sbjct 1017 ATGTGGAAACGCGGTGGCGGTCTTTCAATTCTGCCAGATTGTAGCAAGACAGCCTAAGAT 1076
Query 1221 GGGGCAGAGCAATGTGATAACCGCTCAGTCACGCG 1255
||||||||||||||| ||||||||||| |||||||
Sbjct 1077 GGGGCAGAGCAATGTCATAACCGCTCAATCACGCG 1111
Score = 309 bits (167), Expect = 5e-83
Identities = 237/270 (88%), Gaps = 7/270 (3%)
Strand=Plus/Plus
Query 106 ATAACAACGGTGATCGGGGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAAAAT 162
|||| || ||| || || ||| |||||| ||| ||| ||||||||||||||||||||
Sbjct 37 ATAATAATGGTAATTGGCGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAAC 96
Query 163 ATTTTGTTGGAGCTCAA-GAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTGAGTT 221
||||||||||||| || | |||| || ||||||||||||||||| | | ||||||| ||
Sbjct 97 CTTTTGTTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTT 155
Query 222 ATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGAT 281
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 156 ATTGATCATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGAT 215
Query 282 GGAAGACACAAAACTACTTG-AGCAGATGGGGAATGATATGCTTGGTGTGAAGGAGGACA 340
||| || ||||||| || || || |||||| |||||||||||||||||||||||||||||
Sbjct 216 GGATGATACAAAACAACATGAAG-AGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 274
Query 341 CAAATCTATTTGAAGAGATGATGGAGTCGG 370
||||||||||||| ||||||||||||||||
Sbjct 275 CAAATCTATTTGAGGAGATGATGGAGTCGG 304
Score = 279 bits (151), Expect = 4e-74
Identities = 234/274 (85%), Gaps = 6/274 (2%)
Strand=Plus/Plus
Query 1267 TGGAGGAAG-TATTCAACAGTTGTGGTTCTACAATCTTTTATCGGTGATTTAGTTGATCC 1325
|||||| || | ||||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 1213 TGGAGG-AGATTTTCAACAGTCGCGGTTCTGCAATCTTTCATCGGTGATTTAGTTGATCC 1271
Query 1326 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTATCAACTCTCTACTACGGCGAATA 1385
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1272 CGCAGGCTGGACTCCTTGGAAAGGAGAAACTGGTCTATCAACTCTCCACTACCGCGAATA 1331
Query 1386 TCAAAACATGGGCCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGGTTTAGAGT 1445
|||||| | ||| || |||||||||||||||| |||||| |||||| |||| |||| |||
Sbjct 1332 TCAAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGATTTAAAGT 1391
Query 1446 TCTTACGGATCCTAACGAAGCCG-CAAAATTCACTGTTAGC-AAGCTATTAGATGGAGAA 1503
| | | |||||||| ||| | || |||||||||| ||| ||||| ||||||||||||
Sbjct 1392 TATGAAAGATCCTAAA-AAGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAA 1449
Query 1504 TCGTGGTTGAAAGCAAGTGGAGTTCCGTACGAAA 1537
| ||| |||||| |||| || |||| || ||||
Sbjct 1450 ACTTGGCTGAAAGAAAGTCGAATTCCATATGAAA 1483
> AT1G36700.1 | Symbols: | pseudogene, hypothetical protein |
chr1:13877990-13878553 REVERSE LENGTH=564
Length=564
Score = 569 bits (308), Expect = 2e-161
Identities = 453/519 (87%), Gaps = 26/519 (5%)
Strand=Plus/Plus
Query 106 ATAACAACGGTGATCGGGGTTTGCAAAGGATA---TGA-CGACAAACAGTCATGTCAAAA 161
||||||| ||| || || ||| ||||| ||| ||| || ||||||||||||||||||
Sbjct 36 ATAACAATGGTTATTGGCGTTAGCAAAAAATATTGTGATCG-CAAACAGTCATGTCAAAA 94
Query 162 -TATTTTGTTGGAGCTCAAGAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTGAGT 220
| ||||||||||||| |||| || |||||||||||||| |||||| | | ||||| |
Sbjct 95 CT-TTTTGTTGGAGCTTAAGACAGTTTCCTCGTCACTCTCAAAGATGAGACGCCGTGACT 153
Query 221 TATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGA 280
|||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct 154 TATTGATCATCGTTTTGAAGAATTCCGTG-CGAGGATTGACATGGCTATGATTGGTGTGA 212
Query 281 TGGAAGACACAAAACTACTTGAGCAGATGGGGAATGATATGCTTGGTGTGAAGGAGGACA 340
||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 213 TGGAAGAGACAAAACAACTTGAGGAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACA 272
Query 341 CAAATCTATTTGAAGAGATGATGGAGTCGGCAAAAAATAGGATGATCCGTTCAGTGGAGG 400
||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 273 CAAATCTATTTGAAGAGATGATGGAGTTGGCAAAAGATAGGATGATCCGTT---T----- 324
Query 401 AACTTTTAGGAGGAGAAAGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTGGCTCA 460
| |||||||||||||| ||||||||| |||||||||||||||||||||| ||| |
Sbjct 325 ---T---AGGAGGAGAAAGCCCTAATCTTGGATCTTACGAAAACGTCCACACTTAGCTTA 378
Query 461 GTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTATAAAC 520
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 379 GTGGCGTTCTTACTAGCTACATCACATGTATCAACGAAATTGGTGAAGGTGCCTATAAAC 438
Query 521 G-TCGGGTCGAGCCAGAGCTTGAGGACCTTATTTCTAGGGCAAGAGTAGCTTTGG-CAAT 578
| | ||||||||||| | ||||||||||| ||||||||||||||||||||||||| | |
Sbjct 439 GAT-GGGTCGAGCCATACCTTGAGGACCTCATTTCTAGGGCAAGAGTAGCTTTGGTCC-T 496
Query 579 TTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAA 617
|||||| |||||||| ||||||||| ||||| |||||||
Sbjct 497 TTTTATCTCCATTTCCCCGAGAGACAACACCAAACTTAA 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5