BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914030
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64660.1 | Symbols: ATMGL, MGL | methionine gamma-lyase | ch... 2134 0.0
> AT1G64660.1 | Symbols: ATMGL, MGL | methionine gamma-lyase |
chr1:24028918-24030780 FORWARD LENGTH=1628
Length=1628
Score = 2134 bits (1155), Expect = 0.0
Identities = 1269/1326 (96%), Gaps = 0/1326 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCATTTCCTCGAGACACAGCAGCCCCTCGTATTCTCCGGAAAGAAACGTAACGAT 60
||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 60 ATGGCTCATTTCCTCGAGACACAGGAGCCCCTCGTATTCTCCGGGAAGAAACGAAACGAT 119
Query 61 CGCGATGACGACGACGGAGACGCCTTGGCTGCAAAGAAATCGGCACTGGCGGTGCGTGAT 120
||||||||||| ||||| |||||||||| ||| |||||||| |||||||||||| |||||
Sbjct 120 CGCGATGACGAAGACGGTGACGCCTTGGTTGCGAAGAAATCAGCACTGGCGGTGTGTGAT 179
Query 121 GTCGACCCTGCAGCGGCCCTATCGAGCATCCGACATGAGTTTGGGGAGCACGGGGGAGTG 180
| |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 180 GCCGACCCTGCAGCGGCCATAGCGAATATCCGACATGAGTTTGGGGAGCACGGGGGAGTA 239
Query 181 AACATGTCCATCGAAGCCTCCGCCACCTTCACCGTCATGGAACCTGATACCATGAGGCGG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 AACATGTCCATCGAAGCCTCCGCCACCTTCACCGTCATGGAACCGGATACCATGAGGCGG 299
Query 241 ATGTTCTCCGGAGAACTGGGACCGGACAACGACTTCTTCGTATACAGCCGACACTTCAAC 300
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 ATGTTCACCGGAGAACTGGGACCGGACAACGACTTCTACGTATACAGCCGACACTTCAAC 359
Query 301 CCCACCGTGCTCAACCTCAGCCGCCAGATGGCTGCTCTCGAAGGCACCCAAGCTGCCTAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCCACCGTGCTCAACCTCAGCCGCCAGATGGCTGCTCTCGAAGGCACCCAAGCTGCCTAC 419
Query 361 TGTACCTCAAGCGGTATGTCGGCGATATCGTCAGTGATGCTGCAACTGTGCAGCAGCGGA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTACCTCTAGCGGTATGTCGGCGATATCGTCAGTGATGCTGCAACTGTGCAGCAGCGGA 479
Query 421 GGACACGTGGTGGCGGCAAGCACGCTCTACGGAGGAACACACGCTTTGCTCTCTCATTTC 480
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 GGACACGTGGTTGCGGCAAGCACGCTATACGGAGGAACACACGCTTTGCTCTCTCATTTC 539
Query 481 TTGCCACGGACCTGTAACATAACCACCTCCTTCGTTGACATAACGGACCATGGCGCGGTG 540
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 TTGCCACGGACATGTAACATAACCACCTCCTTCGTTGACATAACGGACCATGGCGCCGTG 599
Query 541 GCAAACGCGATTGTCGAGGGTAGGACAGAGGTTCTCTACTTTGAGTCGGTGGCAAACCCG 600
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 GCAAACGCGATCGTTGAGGGTAGGACACAGGTTCTCTACTTTGAGTCGGTGGCAAACCCG 659
Query 601 ACGCTGACTGTGGCTGACATACCTGAGCTTAGCCGTATGGCACACGAGAAGGGCGTGACA 660
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 ACGCTGACTGTGGCTGACATACCTGAGCTGAGCCGTATGGCACACGAGAAGGGCGTGACG 719
Query 661 GTGGTGGTGGACAACACCTTCGCCCCCATGGTGCTGTCTCCGGCCAAGCTTGGAGCAGAT 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTGGTGGTGGACAACACATTCGCCCCCATGGTGCTGTCTCCGGCCAAGCTTGGAGCAGAT 779
Query 721 GTGGTGGTTCACAGTATCTCCAAGTTCATCAGTGGTGGGGCTGACATCATCGCAGGGGCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTGGTGGTTCACAGTATCTCCAAGTTCATCAGTGGTGGGGCTGACATCATCGCAGGGGCC 839
Query 781 GTGTGTGGGAGTGAGAAGCTGGTGAAAGGGATGATGGATCTGCGTGGCGGATCTCTGATG 840
||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct 840 GTGTGTGGGAGTGAGAATTTGGTGAAAGAGATGATGGATCTTCGTGGCGGATCTCTGATG 899
Query 841 CTGCTAGGTCCCACAATGAACGCCAAGGTGGCTTTCGAGCTCTCCGAGCGAATACCTCAC 900
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 CTTCTAGGTCCCACCATGAACGCCAAGGTGGCTTTCGAGCTCTCCGAGCGAATCCCTCAC 959
Query 901 TTGGGCCTACGCATGAGGGAGCACAGCCGCAGAGCCCAAGTATATGCTGAGAGAATGAGG 960
||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 960 TTGGGCCTACGCATGAGAGAGCACAGCCACAGAGCCCAAGTGTATGCGGAGAGAATGAGG 1019
Query 961 GAGTTGGGGTTGAAAGTCATATATCCAGGGCTCGAGACCCACCCGCAGCACAGGCTATTC 1020
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 GATTTGGGCATGAAAGTCATATATCCAGGGCTCGAGACCCACCCGCAGCACAAGCTATTC 1079
Query 1021 AAAAGGATGGCGAACAGAGACTACGGATACGGAGGATTGCTGTCGATAGACATGGAGACA 1080
||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAAGGGATGGTGAATAGAGACTATGGATACGGAGGATTGCTGTCGATAGACATGGAGACA 1139
Query 1081 GAGGAGAAAGCCAACAAGCTCATGACATATCTCCAGAACGCCACTCAGTTCGGCTTCATG 1140
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1140 GAGGAGAAAGCCAACAAGCTCATGGCATATCTCCAGAACGCCACTCAGTTTGGCTTCATG 1199
Query 1141 GCCGTCAGTTTGGGTTACTACGAGACACTCATGTCCTGCTCCGGCAGCAGCACCAGCAGC 1200
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1200 GCCGTCAGTTTGGGTTACTACGAGACACTCATGTCTTGCTCCGGGAGCAGCACTAGCAGC 1259
Query 1201 GAGCTTGACCCCTCGCAGAAGGAAGCTGCAGGCATCTCTCCTGGCCTTGTACGAATGTCT 1260
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 GAGCTTGACCCCTCACAGAAGGAAGCTGCAGGCATCTCTCCTGGTCTTGTACGAATGTCG 1319
Query 1261 GTGGGGTATGTGGGTACATTGGAGCAGAAGTGGACACAATTCGAGAAAGCATTCCTCAGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTGGGGTATGTGGGTACATTGGAGCAGAAGTGGACACAATTCGAGAAAGCATTCCTCAGA 1379
Query 1321 ATGTAA 1326
||||||
Sbjct 1380 ATGTAA 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5