BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914034
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase... 606 6e-173
AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase... 566 1e-160
AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase... 551 3e-156
> AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:10402872-10403511 FORWARD
LENGTH=640
Length=640
Score = 606 bits (328), Expect = 6e-173
Identities = 507/591 (86%), Gaps = 21/591 (4%)
Strand=Plus/Plus
Query 1 ATGGTTGCATACGTCGATAAAAAGTTTTCATCGGCTTGTTTAGTGGTTTTACTAT-TTTT 59
||||| ||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||
Sbjct 15 ATGGTGGCATACGTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACT-TCTTTT 73
Query 60 TGTTGCCTCATCGTATGCAAGGTTTAGTACGATGGTTACAAAAGATGAGATCCACACCAT 119
||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 74 TGTTGACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 133
Query 120 ATGCACCAAACAAGATATCAATTCTTCACTTTGTTTTGAGGTTCTAAA-AGCAACTCCTG 178
||||||||||||||| |||||||||||| |||||||| | |||||||| | ||| |||||
Sbjct 134 ATGCACCAAACAAGAGATCAATTCTTCATTTTGTTTTCAAGTTCTAAATA-CAAATCCTG 192
Query 179 AAATTGGTAGATTAGATCTTT-CTGA-TCTCGCCAAATTTTTGCTCAATTATCAGGCTCA 236
|||||| || ||||||| ||| || | |||| ||||||| |||| ||||||||||||||
Sbjct 193 AAATTGCTAAATTAGAT-TTTCCT-AGTCTCTTCAAATTTGTGCTTAATTATCAGGCTCA 250
Query 237 AAATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCGGGATATTGA 296
|||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 251 AAATATTTCGGATACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGA 310
Query 297 GTCTAAATATTCCGTATGCATAGAAGAATATGAAGATGCTCTAGAAAATCGTGAT-TCTG 355
||| ||||| | ||||||||||| ||||| | ||||| | || ||||||||| | |
Sbjct 311 ATCTCAATATAGCTTATGCATAGAATTATATGGATATGCTTTCGATAATCGTGATAT-TA 369
Query 356 CCCTCAAATATTTGGCTGCCAAAGACTATGACGGCTTAAACACTATGGTCAGTGCAACAA 415
|||||| |||||| ||||||||||||||| || || ||||||||| |||||||| |||
Sbjct 370 CCCTCAGATATTTAGCTGCCAAAGACTATAACAGCGTAAACACTAGGGTCAGTGGAACGT 429
Query 416 TG-ACAGATATGTTTACGTGTACTGATGATTTATCAACAATGAAGCCAATCCCACAATTA 474
|| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 430 TGGA-AGATATATTTACGTGTACTGATGATTTGTCAACAATGAAGCCAATACCACAATTT 488
Query 475 TTTGTGACGAAAAGTAATGTT-ATTAGTGA-TCTGTCTAACATTATCTTCGTGATTCTCG 532
||| ||||| |||||||| || |||| || | ||||||| ||| |||| ||||||||||
Sbjct 489 TTTATGACGGAAAGTAAT-TTGATTAAAGAAT-TGTCTAAGATTCTCTTAGTGATTCTCG 546
Query 533 AATGTTTCCTAAGAGaaaaaaaaa-aaTTATGTAATTCTCGTGATCTATAA 582
|||||||| |||| || | |||| |||| ||||||| | |||||||||
Sbjct 547 AATGTTTCATAAGT-AAGAGAAAAGAATTCTGTAATT---GAGATCTATAA 593
> AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:1877872-1878545 FORWARD
LENGTH=674
Length=674
Score = 566 bits (306), Expect = 1e-160
Identities = 485/570 (85%), Gaps = 18/570 (3%)
Strand=Plus/Plus
Query 1 ATGGTTGCATACGTCGATAAAAAGTTTTCATCGGCTTGTTTAGTGGTTTTACTAT-TTTT 59
|||||||| |||||||||||||| ||||||| ||||||||| |||||||||| | ||||
Sbjct 17 ATGGTTGCTTACGTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACT-TCTTTT 75
Query 60 TGTTGCCTCATCGTATGCAAGGTTTAGTACGATGGTTACAAAAGATGAGATCCACACCAT 119
||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 76 TGTTGACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 135
Query 120 ATGCACCAAACAAGATATCAATTCTTCACT-TTGTTTTGAGGTTCTAAAAGCAACTCCTG 178
|||||||||||||||||||||||||||| | ||||||| | |||||||| |||| |||||
Sbjct 136 ATGCACCAAACAAGATATCAATTCTTCA-TATTGTTTTCAAGTTCTAAACGCAAATCCTG 194
Query 179 AAATTGGTAGATTAGATCTTTC-T-GATCTCGCCAAATTTTTGCTCAATTATCAGGCTCA 236
|||||| |||||||||| |||| | | |||| ||||||| |||| ||||||||||||||
Sbjct 195 AAATTGCTAGATTAGAT-TTTCCTAG-TCTCTTCAAATTTGTGCTTAATTATCAGGCTCA 252
Query 237 AAATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTACACGC-GGGATATTG 295
||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 253 AAATATTTCAGATAAGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCCGGG-TGTTG 311
Query 296 AGTCTAAATATTCCGTATGCATAGAAGAATATGAAGATGCTCTAGAAAATCGTGATTCTG 355
| ||||||||| | |||| |||||| |||||| || || | || |||||| |
Sbjct 312 AATCTAAATATAACTTATGTATAGAATTTTATGAAAATTCTTTCGACCGGCGTGATGAAG 371
Query 356 CCCTCAAATATTTGGCTGCCAAAGACTATGACGGCTTAAACACTATGGTCAGTGCAACAA 415
|||||| ||||||||||||||||||||||| | || |||||||||||||| ||| |||
Sbjct 372 CCCTCAGATATTTGGCTGCCAAAGACTATGGCAGCGTAAACACTATGGTCGGTGGAACGG 431
Query 416 TGACAGATATGTTTA-CGTGTACTGATGATTTATCAACAATGAAGCCAATCCCACAATTA 474
|| | ||||||| | | ||| |||||||||| ||||||||||||||| | ||||||||
Sbjct 432 CGATAAATATGTTCAAC-TGTGCTGATGATTTGTCAACAATGAAGCCAGTACCACAATTT 490
Query 475 TTTGTGACGAAAAGTAATGTT-ATTAGTGA-TCTGTCTAACATTATCTTCGTGATTCTCG 532
||||||||| |||||||| || |||| || | ||||||| ||| |||| |||||||| |
Sbjct 491 TTTGTGACGGAAAGTAAT-TTGATTAAAGAAT-TGTCTAAGATTCTCTTAGTGATTCTAG 548
Query 533 AATGTTTCCTAAG-A-GaaaaaaaaaaaTT 560
|||||||| |||| | ||||||| || |||
Sbjct 549 AATGTTTCATAAGTAAGAAAAAAGAATATT 578
> AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:3898002-3898609 FORWARD
LENGTH=608
Length=608
Score = 551 bits (298), Expect = 3e-156
Identities = 500/594 (84%), Gaps = 27/594 (5%)
Strand=Plus/Plus
Query 1 ATGGTTGCATACGTCGATAAAAAGTTTTCATCGGCTTGTTTAGTGGTTTTACTAT-TTTT 59
|||||||| |||||||||||||| ||||||| ||||||||| |||||||||| | ||||
Sbjct 1 ATGGTTGCTTACGTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACT-TCTTTT 59
Query 60 TGTTGCCTCATCGTATGCAAGGTTTAGTACGATGGTTACAAAAGATGAGATCCACACCAT 119
||||| |||||||||||||||||||| || | |||||||||||||| |||||||||| ||
Sbjct 60 TGTTGACTCATCGTATGCAAGGTTTAATATGTTGGTTACAAAAGATCAGATCCACACAAT 119
Query 120 ATGCACCAAACAAGATATCAATTCTTCACT-TTGTTTTGAGGTTCTAAAAGCAACTCCTG 178
|||||||||||||||||||||||||||| | ||||||| | |||||||| |||| |||||
Sbjct 120 ATGCACCAAACAAGATATCAATTCTTCA-TATTGTTTTCAAGTTCTAAACGCAAATCCTG 178
Query 179 AAATTGGTAGATTAGATCTTT-CTGA-TCTCGCCAAATTTTTGCTCAATTATCAGGCTCA 236
|||||| |||||||||| ||| || | |||| ||||||| |||| ||||||||||||||
Sbjct 179 AAATTGCTAGATTAGAT-TTTCCT-AGTCTCTTCAAATTTGTGCTTAATTATCAGGCTCA 236
Query 237 AAATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTACACGC-GGGATATTG 295
|||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||
Sbjct 237 AAATATTTCGGATACGCTGAAGCAGTTTAAATTATCAGGAGGTTACACGCCGGG-TGTTG 295
Query 296 AGTCTAAATATTCCGTATGCATAGAAGAATATGAAGATG--CTCTAGAAAATCGTGATTC 353
| ||| ||||| | |||||||| || ||||| |||| || | || |||||||||
Sbjct 296 AATCTCAATATAGCTTATGCATAAAATTATATG--GATGGGCTTTCGATAATCGTGATAG 353
Query 354 TGCCCTCAAATATTTGGCTGCCAAAGACTATGACGGCTTAAACACTATGGTCAGTGCAAC 413
| ||||| |||||||||||||||||||||| || || ||| ||||||| || ||| |||
Sbjct 354 TATCCTCAGATATTTGGCTGCCAAAGACTATAACAGCGTAAGCACTATGATCGGTGGAAC 413
Query 414 AATG-ACAGATATGTTTACGTGTACTGATGATTTATCAACAATGAAGCCAATCCCACAAT 472
|| | ||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 414 GTTGGA-AGATATGTTTACGTGTACTGATGATTTGTCAACAATGAAGCCAGTACCACAAT 472
Query 473 TATTTGTGACGAAAAGTAATGTT-ATTAGTGA-TCTGTCTAACATTATCTTC-GTGATTC 529
| ||| ||||| |||||||| || |||| || | | ||||| ||| || | |||||||
Sbjct 473 TTTTTATGACGGAAAGTAAT-TTGATTAAAGAAT-TATCTAAGATTCTCG-CAGTGATTC 529
Query 530 TCGAATGTTTCCTAAGAGaaaaaaaaa-aaTTATGTAATTCTCGTGATCTATAA 582
| ||||||||| |||| || | |||| |||| ||||||| | |||||||||
Sbjct 530 TTGAATGTTTCATAAGT-AAGAGAAAAGAATTCTGTAATT---GAGATCTATAA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5