BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914043
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49490.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 688 0.0
> AT1G49490.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:18317563-18320106 REVERSE LENGTH=2544
Length=2544
Score = 688 bits (372), Expect = 0.0
Identities = 549/630 (87%), Gaps = 29/630 (5%)
Strand=Plus/Plus
Query 1 TAC-AACTCAACCACCAGTGAGAGCTCC-ACACCGATTCAAGCCCCAACTCCATCCTCTG 58
||| ||| ||||||||| || ||||||| ||||||| |||||| ||||| ||||||||||
Sbjct 1932 TACAAAC-CAACCACCAATGGGAGCTCCAACACCGACTCAAGCACCAACACCATCCTCTG 1990
Query 59 AAACAACCCAAGTGCCAACTCCATCATCAGAATCATATCAAGCAC-CATCTTTGTCACCA 117
||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||
Sbjct 1991 AAACAACCCAAGTGCCAACTCCATCATCAGAATCAGATCAATCACAAAT-TTTGTCACCA 2049
Query 118 ATTCAAGCTCCAACACCGGTTCAAGCCCCAACCAAATCCTCTGAAACATCCCAAGTACCA 177
||||||||||||||||||||||| || ||||| |||||||||| || ||||||| |||
Sbjct 2050 GTTCAAGCTCCAACACCGGTTCAATCCTCAACCCCATCCTCTGAACCAACCCAAGTGCCA 2109
Query 178 ACT-C--CATCATCAGAATCGA-ACCAATCACC-AATTTCATCACCAGTTCAAGCTCCAA 232
||| | ||||||||||||| | | ||| |||| ||||| |||||||||||||||
Sbjct 2110 ACTCCATCATCATCAGAATC-ATATCAAGCACCAAATTT-GTCACCAGTTCAAGCT---- 2163
Query 233 CACCAATTCTTGAACCGGTTCAAGCCCCAACCAAATCATCTGAAACATCCCAAGCACCAA 292
|||| | |||||||||||||||||||| ||| ||||||||||| |||| |||||
Sbjct 2164 --CCAA--C----ACCGGTTCAAGCCCCAACCACATCCTCTGAAACATCTCAAGTACCAA 2215
Query 293 GTCCATCACCAGAATCATTCCAATCACCAAGTCAAGCTCCAACGCCAATTCTTGAACCGG 352
||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2216 CTCCATCATCAGAATCAAACCAGTCACCAAGTCAAGCTCCAACACCAATTCTTGAACCGG 2275
Query 353 TTCATGCCCCAACACCAAATTCTAAACCGGACCAGTCACCAATACCATCAAACGAACCGG 412
||||||||||||||||||| |||||||||| ||| ||||||| |||||||| ||||||||
Sbjct 2276 TTCATGCCCCAACACCAAACTCTAAACCGGTCCAATCACCAACACCATCAAGCGAACCGG 2335
Query 413 TCTCATCACCAAAACAATCAGAAGAAGGTGAAGCACCAGAA-CAATCACCCGCCACTCCA 471
||||||||||| ||||||||||||||| ||||||||||||| ||| |||||| || ||||
Sbjct 2336 TCTCATCACCAGAACAATCAGAAGAAGTTGAAGCACCAGAACCAA-CACCCGTCAATCCA 2394
Query 472 TCATC---ACCGTCATCTTCTCCGCCCTCCGACACAGCTGTTCCACCACCGGAAAACAAC 528
||||| ||| ||||||||||| || | |||||| || ||||||||||||||||||||
Sbjct 2395 TCATCAGTACCATCATCTTCTCCTTCCACTGACACATCTATTCCACCACCGGAAAACAAC 2454
Query 529 GACGATGATGACGACGGTGATTTCGTCTTACCACCACACATTGGATTCCAATATGCATCA 588
||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 2455 GACGATGATGATGATGGGGATTTCGTCCTACCACCACACATTGGATTCCAATATGCATCG 2514
Query 589 CCACCACCACCGATGTTCCAAGGATACTAA 618
||||||||||| |||||||||||||| |||
Sbjct 2515 CCACCACCACCAATGTTCCAAGGATATTAA 2544
Score = 283 bits (153), Expect = 1e-75
Identities = 254/298 (85%), Gaps = 26/298 (9%)
Strand=Plus/Plus
Query 12 CACCAG-TGAGAGCTCC-ACACCGATTCAAGCCCCAACTCCATCCTCTGAAACAACCCAA 69
|||||| | | |||||| |||||| ||||| || |||| |||||||||||| ||||||||
Sbjct 2045 CACCAGTTCA-AGCTCCAACACCGGTTCAATCCTCAACCCCATCCTCTGAACCAACCCAA 2103
Query 70 GTGCCAACT-C--CATCATCAGAATCATATCAAGCACCATCTTTGTCACCAATTCAAGCT 126
||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 2104 GTGCCAACTCCATCATCATCAGAATCATATCAAGCACCAAATTTGTCACCAGTTCAAGCT 2163
Query 127 CCAACACCGGTTCAAGCCCCAACCAAATCCTCTGAAACATCCCAAGTACCAACTCCATCA 186
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2164 CCAACACCGGTTCAAGCCCCAACCACATCCTCTGAAACATCTCAAGTACCAACTCCATCA 2223
Query 187 TCAGAATCGAACCAATCACCAATTTCATCACCAGTTCAAGCTCCAACACCAATTCTTGAA 246
|||||||| ||||| ||||||| || ||||||||||||||||||||||||
Sbjct 2224 TCAGAATCAAACCAGTCACCAA-----------GT-CAAGCTCCAACACCAATTCTTGAA 2271
Query 247 CCGGTTCAAGCCCCAAC-C-AAATCATCTGAAACA--TCCCAAGCACCAAGTCCATCA 300
|||||||| |||||||| | ||| | ||| |||| ||| || |||||| ||||||
Sbjct 2272 CCGGTTCATGCCCCAACACCAAA-C-TCT-AAACCGGTCC-AATCACCAACACCATCA 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5