BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914052
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49570.1 | Symbols: | Peroxidase superfamily protein | chr1... 1712 0.0
AT4G30170.1 | Symbols: | Peroxidase family protein | chr4:1476... 60.2 4e-08
> AT1G49570.1 | Symbols: | Peroxidase superfamily protein | chr1:18347036-18348951
FORWARD LENGTH=1333
Length=1333
Score = 1712 bits (927), Expect = 0.0
Identities = 1011/1053 (96%), Gaps = 0/1053 (0%)
Strand=Plus/Plus
Query 1 ATGGACCACAAAATCTCAATGTATTTGTTTGTGTCTTACCTAGCAGTCTTTACTCTTTTC 60
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 42 ATGGACCACAAAATGTCAATGTATTTGTTTGTGTCTTACCTAGCAATCTTTACTCTTTTC 101
Query 61 TTCAAAGGCTTTGTCTCCTCGTTTCCTTCGGGATATAACAATGGTTACAATAATGGTCAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 102 TTCAAAGGCTTTGTCTCCTCGTTTCCTTCGGGATATAACAATGGTTACAACAATGGTCAC 161
Query 121 GGATATGGACTAACTAGCAATCTCAACTATCGATTCTATGACCGGTCTTGTCCTCGTCTT 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 162 GGACATGGACTAACTAGCAATCTCAACTATCGATTCTATGACCGGTCTTGTCCGCGTCTT 221
Query 181 CAGACGATTGTTAAGTCCGGAGTTTGGAGAGCTTTTAAAGATGATTCTAGAATCGCTGCG 240
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 222 CAAACGATTGTTAAGTCCGGAGTTTGGAGAGCTTTTAAAGATGATTCTCGAATCGCTGCA 281
Query 241 TCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATGGATGTGATGGATCTATACTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCTCTTCTTCGACTCCATTTCCACGATTGTTTTGTCAATGGATGTGATGGATCTATACTT 341
Query 301 CTGAACGATTCCGAGGATTTCAAAGGAGAGAAGAACGCTCGGCCAAACCGAAACTCAGTC 360
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 342 CTGAACGATTCAGAGGATTTCAAAGGAGAGAAGAACGCTCAGCCAAACCGAAACTCAGTC 401
Query 361 CGTGGCTTCGAAGTCATTGAAGACATTAAATCTGATATCGAAAGTTCTTGTCCCTTAACA 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CGTGGATTCGAAGTCATTGAAGACATTAAATCTGATATCGAAAGTTCTTGTCCCTTAACA 461
Query 421 GTTTCATGCGCTGACATAGTTGCTCTGGCAGCTAGAGAAGCCGTCGTCCTTACTGGAGGG 480
|||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct 462 GTTTCATGCGCTGACATAGTTGCTCTCGCGGCTAGAGAAGCTGTCGTCCTCACTGGAGGA 521
Query 481 CCGTTTTGGCCCGTGCCTTTGGGACGAAGGGACTCATTAACGGCGAGTGAGCAAGCGGCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CCGTTTTGGCCCGTGCCTTTGGGACGAAGGGACTCATTAACGGCGAGTGAGCAAGCGGCG 581
Query 541 AATACAAATCTGCCATCTCCGTTGGAGCCGTTGGAGAATATAACGGCCAAGTTCGTGACC 600
||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 582 AATACAAATCTGCCATCTCCGTTTGAGGCGTTGGAGAATATAACAGCCAAGTTCGTGACC 641
Query 601 CTTGGACTCGACCTCAAGGATGTTGTTGTCCTCTCAGGAGCACACACTATAGGATTTGCT 660
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 642 CTTGGACTCGACCTCAAGGACGTTGTTGTCCTCTCAGGAGCACATACTATAGGATTTGCT 701
Query 661 CAATGTTTCGTGTTCAAGCACAGGCTCTTCAACTTCAAGGGCTCAGGCCAGCCTGACCCA 720
|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 702 CAATGTTTCGTGATCAAGCATAGACTCTTCAACTTCAAGGGCTCAGGCCAGCCTGACCCA 761
Query 721 AACCTAGCTGCTTCATCGGCTCTTCTCTCTAAGCTAAAGGACACATGTCCTAATGTGGAC 780
|||||||| ||||| || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct 762 AACCTAGCCGCTTCCTCAGCACTTCTCTCTAAGCTAAAGGACACGTGTCCTAACGTGGAC 821
Query 781 TCTTCGGACTCTAAGCTCGCAGCTCTTGACGCAGCTAGCTCAGTCAAGTTTGACAATGCT 840
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 822 TCCTCAGACTCTAAGCTCGCTGCTCTTGACGCAGCTAGCTCAGTCAAGTTTGACAATGCT 881
Query 841 TACTACGTGAACTTAGTGAACAACATAGGACTGTTGGATTCCGATCAAACCCTAATGACG 900
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 882 TACTACGTGAACTTAATGAACAACATAGGACTGTTGGATTCTGATCAAACCCTAATGACA 941
Query 901 GATCCTACGGCTGCCGCCTTGGTGAAGTCGTACAGCGAGAATCCATACTTGTTCTCGAAG 960
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 942 GATCCTACGGCTGCCGCCTTGGTGAAGTCGTACAGCGAGAATCCGTACTTGTTCTCGAGG 1001
Query 961 GATTTCGTAGTTTCAATGGTTAAAATGGGGAATATCGGAGTTATGACAGGAAGTGATGGA 1020
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1002 GATTTCGCAGTTTCAATGGTTAAAATGGGGAATATCGGAGTTATGACCGGAAGTGATGGA 1061
Query 1021 GTCATTCGAGCAAAATGTGGATTTCCAGGTTAA 1053
|| ||||||| ||||||||||||||||||||||
Sbjct 1062 GTAATTCGAGGAAAATGTGGATTTCCAGGTTAA 1094
> AT4G30170.1 | Symbols: | Peroxidase family protein | chr4:14762841-14764627
FORWARD LENGTH=1204
Length=1204
Score = 60.2 bits (32), Expect = 4e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 626 TTGTCCTCTCAGGAGCACACACTATAGGATTTGCTCAATGT 666
||| |||||||||||||||||||||||||||||| || |||
Sbjct 641 TTGCCCTCTCAGGAGCACACACTATAGGATTTGCACATTGT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5