BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914056
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49610.1 | Symbols: | F-box family protein | chr1:18361679-... 425 2e-118
AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein | ... 63.9 2e-09
> AT1G49610.1 | Symbols: | F-box family protein | chr1:18361679-18363192
REVERSE LENGTH=1065
Length=1065
Score = 425 bits (230), Expect = 2e-118
Identities = 338/389 (87%), Gaps = 11/389 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGACCACGGCGAAAACAGAGACGGTGCCTCCGCCTCCGTAAGAGTCCTCAACCA- 59
|||||| | ||||||| ||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 1 ATGGCGCTCGACGGCGAGAACAGAGACGGTGGCTCCGCCTCCGTGAGAGTCCTCAAGCAT 60
Query 60 -CCACTCCGAAGATTTAGACACAATAAGCTCTTTGCCTGATGTGATCCTCCATCAAATTC 118
| || ||||||| ||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 61 TGC-CT-CGAAGATGTAGACTCAATAAGCTCTTTGCCTGATGTGATCCTCCAAGAAAACC 118
Query 119 TCTCCTTATTTCAGACCAAATACGCCATAAGAACTTCCATCTTGTCCAAACGATGGAGGT 178
|||||||| ||| |||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 119 TCTCCTTAATTCCGACCAAATTCGCCATAAGAACATCGGTCTTGTCCAAACGATGGAGGC 178
Query 179 ATGTTTGGTTCGAAACACCTTCTCTCTACTTCGATGATTGCTATAAACTAGATGCTGATT 238
||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 179 ATGTTTGGTCCGAAACACCTTCCCTCGACTTCGATGATTGCTATAAACTAGATGTTGATT 238
Query 239 CTGTAGAAAAAACCCTAGATCACTACAGGGCTCGCAAGATTATGACTTTTCAGCTCTGTG 298
| |||| |||||||||| || |||||||||||||||||||||||||||| | ||||| |
Sbjct 239 TTATAGACAAAACCCTAGCTCTCTACAGGGCTCGCAAGATTATGACTTTTGACCTCTG-G 297
Query 299 -CCA-CATCCGTAGTCGATCTTCCTTACA---ATGAATGGATCGAGTTCGCCATGTCCCG 353
|| || || | || |||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 298 ATCACCA-ACGGAATCAATCTTCCTTACATTGATGGATGGATCAAGTTCGCCATGTCCCG 356
Query 354 AAACGTGGAGAATCTGTTTCTGAATTTCG 382
||||||||||||||||||||||| |||||
Sbjct 357 AAACGTGGAGAATCTGTTTCTGAGTTTCG 385
Score = 298 bits (161), Expect = 5e-80
Identities = 210/234 (90%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 484 TACTTGTGTGGCTTGAATCTGAATCACTGCTGGGTCTTTGGGAATG-TTTTCCATTGGAA 542
|||||| || || |||| ||| |||| |||| | ||||| | || | ||| || | ||||
Sbjct 808 TACTTGCGTTGCATGAAGCTGGATCATTGCTCGATCTTT-GCAAAGATTTCCCGTCGGAA 866
Query 543 TGTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGATTAAAACCACAAAGGCATT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 867 TGTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGATTAAAACCACAAAGAAATT 926
Query 603 AGAGAAAATGGTCGTAAGGTTGGAAAGTTACCTTGATGGAAGAGATTTTGAAGAATTGCT 662
|||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 927 AGAGAAGATGGTCGTAAGGTTGGAAAGTTATCTTGATGGAAGAGGTTTCGAAGAATTGCT 986
Query 663 TGAGATGGTTCCCATGCTTTCTCAAAACAACAATGTCTCCATTGAGTTTAGCTC 716
|||||||||||| ||||||||||||||||||||||||||||||| | |||||||
Sbjct 987 TGAGATGGTTCCAATGCTTTCTCAAAACAACAATGTCTCCATTGTGCTTAGCTC 1040
> AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:794906-797013 FORWARD LENGTH=1732
Length=1732
Score = 63.9 bits (34), Expect = 2e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 331 TGGATCGAGTTCGCCATGTCCCGAAACGTGGAGAATCTGT 370
|||||| | |||||||||||||||||||||||||||||||
Sbjct 576 TGGATCAACTTCGCCATGTCCCGAAACGTGGAGAATCTGT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5