BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914086

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G34830.1 | Symbols:  | unknown protein; Has 19 Blast hits to...   643    0.0  


> AT5G34830.1 | Symbols:  | unknown protein; Has 19 Blast hits 
to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 3; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:12981645-12982497 FORWARD 
LENGTH=468
Length=468

 Score =  643 bits (348),  Expect = 0.0
 Identities = 383/400 (96%), Gaps = 2/400 (1%)
 Strand=Plus/Plus

Query  67   GAGAATTCAAAGAAGAGGAAGCAAGAATATCTCCTTACCCAACTATCTATAGATGGTGTC  126
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  70   GAGAATTCAAAGAAGAGGAAGCAAGAATATCTCCTTACCCAACCATCTATAGATGGTGTC  129

Query  127  GAGAATAATG-ACGTACCAATGGAGATTGTCAACAAAATCGTTTTTGAGGAAACTCCAAA  185
            ||||||| || | || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  130  GAGAATAGTGTA-GTCCCAATGGAGATTGTCAACAAATTCGTTTTTGAGGAAACTCCAAA  188

Query  186  AAGAAAAGGTCGGATATTTGGGTTAGGAAAACTAGGTGTAGCTCGATATAAGTCTCGTTC  245
            |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  189  AAGAAAGGGTCAGATATTTGGGTTAGGAAAACTAGGTGTAGCTCGATATAAGTCTCATTC  248

Query  246  CACATCGTCGTGTTCATGTGATCCCATGCTCGAGGCGTCTCTCAAAGAGAAAGAAGCACG  305
            ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  249  CACATCGTCGTATTCATGTGATCCCATGCTTGAGGCGTCTCTCAAAGAGAAAGAAGCACG  308

Query  306  GATTGAAGCTTTGGAGACTCAAATGGCCGAAGAGAAAGCCGAGAACAAGCACCGAACTGA  365
            ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct  309  GATTGAAGCTTTGGAGACTCAAATGGCCGAAGAGAAAGCTGAGAACAAGCGCCGAACCGA  368

Query  366  TGAGATGGCAAAGGAGATAGCCGAAAACAAGAAAAGTTCTGAGGCGATGATGCGTTTCAT  425
            ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  369  TGAGATGGCAAAGGAGATAGCCGAAAACAAGAAAAGTTCCGAGACGATGATGCGTTTCAT  428

Query  426  GGGAGATATGCGAATGCGGTTTCCCAATTCTAGTTCTTAG  465
            || |||||||||||||||||||||||||||||||||||||
Sbjct  429  GGAAGATATGCGAATGCGGTTTCCCAATTCTAGTTCTTAG  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5