BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914090 Length=654 Score E Sequences producing significant alignments: (Bits) Value AT1G49830.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 628 1e-179 ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta | chr... 82.4 5e-15 > AT1G49830.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18445111-18446659 REVERSE LENGTH=753 Length=753 Score = 628 bits (340), Expect = 1e-179 Identities = 431/472 (91%), Gaps = 17/472 (4%) Strand=Plus/Plus Query 151 TCGGGTGATGAGCACGACCGGGTCTGCGATCCAAAACCGGGTAAGAGATGCAAGGGAGAT 210 |||| ||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 283 TCGGCTGATGGGCACGACCGGGTTTGCGATCCAAAACCCGGTAAGAGATGCAAGCGAGAT 342 Query 211 CAGACGAAGTCATCGGTTGGAAATGCTAAGGTTAAGAAAGAAAAGGTTGGTGAAAGAATC 270 |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |||| Sbjct 343 CAGAAGAAGTCATCGCTTGGAAATGCTAAGGTCAAGAAAGAAAAGGTTGGTGAAAAAATC 402 Query 271 ACAGCATTGCAACAGTTGGTTTCTCCATATGGCAAGACAGATACAGCATCAGTGTTGCAT 330 ||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 403 ACAACATTGCAGCACTTGGTTTCTCCATATGGCAAGACAGATGCAGCATCAGTGTTGCAT 462 Query 331 GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC 522 Query 391 TTCAAACATAACCCTCTTGTAAGACGACGAAGACACCGGAGGAGTAAACCCGACGATGAA 450 ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| Sbjct 523 TTCAAACATAACCCTCTTG-A---CGACGAAGACACCGGAGAAGTAAACCCGACGATGAA 578 Query 451 AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT 638 Query 511 ----AA--C----GGTGTTGATTTATGGTCCTCTGCTATCTA-TCTTG--TCACCAGTCA 557 || | |||| |||||||||||||||||| |||| || |||||||||| Sbjct 639 GGCGAATACTAACGGTGCTGATTTATGGTCCTCTGCCATCTTGTCACCACTCACCAGTCA 698 Query 558 CACCAAAAGTGAACCAGTAGAGACTGTGGAAGTTAAATCTTATAAAGATAAG 609 |||||| |||||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 699 CACCAACAGTGAACCAGTAGAGATTGTGGAAGTCAAATCTCATAAAGATAAG 750 > ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=3219 Length=3219 Score = 82.4 bits (44), Expect = 5e-15 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 611 TTTTTGATGCATACAAGTATTTTTGTTTGAGCGTTGATACATAA 654 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1875 TTTTTGATGCATACAAGTATTTTTGTTTGAGCGTTGATACATAA 1832 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31597278463 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5