BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914090

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49830.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   628    1e-179
  ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta | chr...  82.4    5e-15 


> AT1G49830.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr1:18445111-18446659 REVERSE 
LENGTH=753
Length=753

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 431/472 (91%), Gaps = 17/472 (4%)
 Strand=Plus/Plus

Query  151  TCGGGTGATGAGCACGACCGGGTCTGCGATCCAAAACCGGGTAAGAGATGCAAGGGAGAT  210
            |||| ||||| |||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct  283  TCGGCTGATGGGCACGACCGGGTTTGCGATCCAAAACCCGGTAAGAGATGCAAGCGAGAT  342

Query  211  CAGACGAAGTCATCGGTTGGAAATGCTAAGGTTAAGAAAGAAAAGGTTGGTGAAAGAATC  270
            |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  343  CAGAAGAAGTCATCGCTTGGAAATGCTAAGGTCAAGAAAGAAAAGGTTGGTGAAAAAATC  402

Query  271  ACAGCATTGCAACAGTTGGTTTCTCCATATGGCAAGACAGATACAGCATCAGTGTTGCAT  330
            ||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  403  ACAACATTGCAGCACTTGGTTTCTCCATATGGCAAGACAGATGCAGCATCAGTGTTGCAT  462

Query  331  GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC  390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  463  GAAACAATGGGTTACATAAAATTCTTACAAGACCAAGTTCAAGTTCTTTCAACCCCTTAC  522

Query  391  TTCAAACATAACCCTCTTGTAAGACGACGAAGACACCGGAGGAGTAAACCCGACGATGAA  450
            ||||||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||
Sbjct  523  TTCAAACATAACCCTCTTG-A---CGACGAAGACACCGGAGAAGTAAACCCGACGATGAA  578

Query  451  AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT  510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  579  AGTGAAAGAGTTGAGAAGCAATGGTTTATGTCTTGTTCCACTAGCTTGGACCGTACACGT  638

Query  511  ----AA--C----GGTGTTGATTTATGGTCCTCTGCTATCTA-TCTTG--TCACCAGTCA  557
                ||  |    |||| |||||||||||||||||| ||||  ||     ||||||||||
Sbjct  639  GGCGAATACTAACGGTGCTGATTTATGGTCCTCTGCCATCTTGTCACCACTCACCAGTCA  698

Query  558  CACCAAAAGTGAACCAGTAGAGACTGTGGAAGTTAAATCTTATAAAGATAAG  609
            |||||| |||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct  699  CACCAACAGTGAACCAGTAGAGATTGTGGAAGTCAAATCTCATAAAGATAAG  750


> ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 
REVERSE LENGTH=3219
Length=3219

 Score = 82.4 bits (44),  Expect = 5e-15
 Identities = 44/44 (100%), Gaps = 0/44 (0%)
 Strand=Plus/Minus

Query  611   TTTTTGATGCATACAAGTATTTTTGTTTGAGCGTTGATACATAA  654
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1875  TTTTTGATGCATACAAGTATTTTTGTTTGAGCGTTGATACATAA  1832



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31597278463


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5