BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914105
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49980.1 | Symbols: | DNA/RNA polymerases superfamily prote... 2547 0.0
> AT1G49980.1 | Symbols: | DNA/RNA polymerases superfamily protein
| chr1:18507971-18513172 FORWARD LENGTH=2734
Length=2734
Score = 2547 bits (1379), Expect = 0.0
Identities = 1531/1603 (96%), Gaps = 15/1603 (1%)
Strand=Plus/Plus
Query 1 ATGGATAATGGCGAATCATCATCCACCAACAATTCGTCGCGTCCATGGGAATCCTACAAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 ATGGATAATGGCGAATCATCATCCACCAACAATTCGTCGCGTCCATGGGAATCCTACAAT 115
Query 61 ACCTTCTTCACGAACGCCAAAGCCGGAATGGAGGGAGTTGATAAGGAAAAAGTCCAGAGG 120
||| ||||||| ||||| |||||||| |||||||||||||| || || ||||||||||||
Sbjct 116 ACCGTCTTCACTAACGCGAAAGCCGGTATGGAGGGAGTTGACAAAGAGAAAGTCCAGAGG 175
Query 121 ATTGTCTATGAAATGAGTAAAGGATCCAAGTTTTTTCAAAATGAGGAACGTAAAGAAGCT 180
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 176 GTTGTCTATGAAATGAGTAAAGGATCCAAGTATTTTCAAAATGAGGAGCGTAAAGAAGCT 235
Query 181 CTTATGAAACAAAAGATTGAGCATATGCGTGATAGATGCGCAAAGCTTTCGT-CCTCTAA 239
||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| | |
Sbjct 236 CTTATGAAACAAAAGATTGAGCATATGCGTGATCGATGCGCAAAGCTTTCATCCCT-TGA 294
Query 240 TTTATCTAATTATCACAAGGTGGTTGATAAAAGGATCTTAGAGTTAGAAGCTACACGTGA 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTTATCTAATTATCAGAAGGTGGTTGATAAAAGGATCTTAGAGTTAGAAGCTACACGTGA 354
Query 300 CCTATCCAGAATTTGGCTGCATGTTGATATGGATGCTTTTTATGCTGCTGTTGAAACTTT 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CCTATCCAGAATTTGGCTTCATGTTGATATGGATGCTTTTTATGCTGCTGTTGAAACTTT 414
Query 360 GAGCGATCCTTCTCTCAAGGGCAAGCCGATGGCTGTTGGAGGATTGTCCATGATCTCCAC 419
|||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 415 GAGCGATCCTTCGATCAAGGGCAAGCCAATGGCTGTTGGAGGCTTATCCATGATCTCCAC 474
Query 420 TGCTAATTATGAGGCAAGGAAGTTTGGGGTCCGTGCTGCAATGCCTGGCTTCATTGCTCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGCTAATTATGAGGCAAGGAAGTTTGGGGTCCGTGCTGCAATGCCTGGCTTCATTGCTCG 534
Query 480 TAAACTATGTCCAGATTTGATATTTGTTCCTGTAGATTTCACTAAGTATACTCACTACAG 539
|||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 TAAATTGTGTCCAGATTTGATATTTGTTCCTGTTGATTTCACTAAGTATACTCACTACAG 594
Query 540 TGACTTAACAAGAAAGGTTTTTAGGAACTATGATCCTCACTTCATTGCTGGGAGCTTGGA 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGACTTAACCAGAAAGGTTTTTAGGAACTATGATCCTCACTTCATTGCTGGGAGCTTGGA 654
Query 600 TGAAGCCTACCTTGACATAACTGAGGTTTGTCGAGAAAGAGGTCTTTCAGGTGGAGAAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGAAGCCTACCTTGACATAACTGAGGTTTGTCGAGAAAGAGGTCTTTCAGGTGGAGAAAT 714
Query 660 TGCAGAGGAGCTTAGATCTTCTGTTTATTCCGAGACTGGACTGACATGCAGTGCTGGAGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGCAGAGGAGCTTAGATCTTCTGTTTATTCCGAGACTGGACTGACATGCAGTGCTGGAGT 774
Query 720 AGCGGCAAACCGCTTACTAGCCAAGGTTTGCTCAGACATTAACAAGCCTAATGGACAGTT 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGCGGCAAACCGCTTGCTAGCCAAGGTTTGCTCAGACATTAACAAGCCTAATGGACAGTT 834
Query 780 TGTTCTACAAAATGACCGATCAACTGTCATGACATTTGTATCTTCCCTCCCTGTAAGAAA 839
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 835 TGTTCTACAAAATGACCGATCAACTGTCATGACATTCGTATCTTTCCTCCCTGTAAGAAA 894
Query 840 GATCGGTGGAATTGGTAAGGTTACTGAACATATTCTAAAAGATGCTTTGGGAATTAAAAC 899
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 895 GATCGGTGGAATTGGTAAGGTTACTGAACATATTTTAAAGGATGCTTTGGGAATTAAAAC 954
Query 900 ATGCGAGGAGATGGTGCAGAAGGGAtctcttctctacgctctcttctctcAGTCGTCAGC 959
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 955 ATGTGAGGAGATGGTGCAGAAGGGATCTCTTCTCTACGCTCTCTTCTCTCAGTCATCAGC 1014
Query 960 AGACttttttttGTCGGTTGGACTGGGGCTTGGAGGAACAGACACCCCTCAGGTTAGGTC 1019
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 AGACTTTTTTTTGTCGGTTGGACTGGGGCTTGGAGGAACAAACACCCCTCAGGTTAGGTC 1074
Query 1020 TCGTAAAAGTATTAGCAGTGAGAGGACATTTGCTGCGACAGGAGATGAAAGATTGCTATA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TCGTAAAAGTATTAGCAGTGAGAGGACATTTGCTGCGACAGGAGATGAAAGATTGCTATA 1134
Query 1080 TTCGAAGTTGGCTGAAATTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGTCTAAC 1139
||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1135 TTCCAAGTTGGATGAACTTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGCCTAAC 1194
Query 1140 AGCAAGGACGTTGACACTTAAACTGAAAACTGCCTCCTTTGAGATCAGGAGCAGAGCTGT 1199
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AGCAAGAACGTTGACACTTAAACTGAAAACTGCCTCCTTTGAGATCAGGAGCAGAGCTGT 1254
Query 1200 TAGCCTGCAGAGGTACACGTGTTCAAGCGATGATATACTAAAGCATGCTACAAAGCTGTT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TAGCCTGCAGAGGTACACGTGTTCAAGCGATGATATACTAAAGCATGCTACAAAGCTGTT 1314
Query 1260 GAAGGCGGAACTTCCTGTTTCCGTAAGGTTGATAGGTTTGCGCATGTCGCAGTTCGTTGG 1319
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAAGGCAGAACTTCCTGTTTCCGTAAGGTTGATAGGTTTGCGCATGTCGCAGTTCGTTGA 1374
Query 1320 AGAAATCCGCAATTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AGAAATCCGCAATTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGA 1434
Query 1380 TTCTTCAAGACAAG-A-----TCTGGATGATAATGACTCATTTGACTTAGATGCTAGTAA 1433
||| |||||||||| | ||||||||| ||||||||||||||||| ||||||| |||
Sbjct 1435 TTCCTCAAGACAAGCACAAGATCTGGATGACAATGACTCATTTGACTTGGATGCTAATAA 1494
Query 1434 AAATTGCTTAAGTAATGACGTGAGT-----T-TATCCTTTGGTTCCCATGAGACAAGCTA 1487
|||||||||||| ||||||| ||| | ||||||||||||| |||||||||||||
Sbjct 1495 AAATTGCTTAAGCAATGACGAGAGCGGGAATGTATCCTTTGGTTCTCATGAGACAAGCTC 1554
Query 1488 TGCCCATCTGAAGGATGTTGTTGAATATGAAGAACGATCACAAATAGATTCTGAAAAGGT 1547
||||||||||||||||||||| |||||||||||||| || ||||||||||| | ||||||
Sbjct 1555 TGCCCATCTGAAGGATGTTGTCGAATATGAAGAACGGTCCCAAATAGATTCCGGAAAGGT 1614
Query 1548 AATTCCAAATCAAGAATGTGTGAAAAA-GAAGAAAGGCCGCAA 1589
||||||||||||||| ||| ||||||| |||||||||| ||||
Sbjct 1615 AATTCCAAATCAAGAGTGTATGAAAAAAGAAGAAAGGCTGCAA 1657
Score = 468 bits (253), Expect = 1e-130
Identities = 303/326 (93%), Gaps = 7/326 (2%)
Strand=Plus/Plus
Query 1590 CAGTTTCAGTATTTCCGCAAACGG-GCCATTATATTGGGTTGATGGCTACAAATGCGTCT 1648
|||||||||||||||| ||||||| ||| ||||||||| |||| ||||||||||||||||
Sbjct 1749 CAGTTTCAGTATTTCCACAAACGGAGCCGTTATATTGGATTGACGGCTACAAATGCGTCT 1808
Query 1649 TGTGTGGGATAGAGTTACCACCATCTTTTGTTGAGGAACGACAAGAACACCTCCTGATTT 1708
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1809 TGTGTGGGATAGAGTTACCACCATCTTTTGTAGAGGAACGACAAGAACAC-TC-TGATTT 1866
Query 1709 TCATCTTGCTCAGAGACTTCAAAACGAAGAATCTGGATCTAGTTCTTCCACAACACCTTC 1768
|||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1867 TCATCTCGCTCAGAGACTTCAAAACGAAGAAACTGGCTCTAGTTCTTCCACAACACCTTC 1926
Query 1769 AAAACGAAGG-T-CAGCTGACAG-AAAAGGTAAATTCCAAGCGAAAGAAGCAGAAACCAG 1825
|||||||||| | | | || || ||||||||||||| |||| |||||||||||||||||
Sbjct 1927 AAAACGAAGGATTCT-CGGAAAGGAAAAGGTAAATTCGAAGCCAAAGAAGCAGAAACCAG 1985
Query 1826 ATCAAAAGGACAGTAGCAAACACATCCCAATACACACATTCTTCACAAAGAGCAATCAAA 1885
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1986 ATCAAAAGGACAGTAGCAAACACATCCCAATACACGCATTCTTCACAAAAAGCAATCAAA 2045
Query 1886 ACTCGAACGAAACCCAGAGGAAATGA 1911
|||| |||||||||||||||||||||
Sbjct 2046 ACTCTAACGAAACCCAGAGGAAATGA 2071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94628027325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5