BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914106

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49980.1 | Symbols:  | DNA/RNA polymerases superfamily prote...   815    0.0  


> AT1G49980.1 | Symbols:  | DNA/RNA polymerases superfamily protein 
| chr1:18507971-18513172 FORWARD LENGTH=2734
Length=2734

 Score =  815 bits (441),  Expect = 0.0
 Identities = 481/501 (96%), Gaps = 0/501 (0%)
 Strand=Plus/Plus

Query  1     ATGTCAGACATCCTGACGTCATCAAAAGCTCGAAAGCTAGACTTAAAGATCCAGACTTTA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2146  ATGTCAGACATCCTGACGTCATCAAAAGCTCGAAAGCTAGACTTAAAGATCCAGACTTTA  2205

Query  61    GGACCGTTTTTCAGAGTGACGGGGAAGAACGCAGATACAGGCGGTGAGGTAGGACGAGCA  120
             |||||||||||||||||||| |||||||||||||| || ||||||||||| ||| |||||
Sbjct  2206  GGACCGTTTTTCAGAGTGACAGGGAAGAACGCAGACACGGGCGGTGAGGTGGGAAGAGCA  2265

Query  121   GAGGGAGTGGTGCGGCCATGGTTCGGACGCGGCTTGGTTCTGCATTTGGATACGATAAGA  180
             |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  2266  GAGGGAGTGGTGCGTCCATGGTTCGGACGCGGTTTGGTTCTGCATTTGGATACGATAAGA  2325

Query  181   CTGACGAAAGAGACGGTGGCAATGGATAAGTCTGTTCTTGGAGTTGGTTTATACGTCGGA  240
             |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  2326  CTGACGAAAGAGACAGTGGCTATGGATAAGTCTGTTCTTGGAGTTGGTTTATACGTCGGA  2385

Query  241   GCTGTAGCTATTCGTCATGGCTACGACTGTGGTTGCCGCACTGCTCAACTTCTCGCTATC  300
             |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct  2386  GCTGTAGCGATTCGCCATGGCTACGACTGTGGTTGCCGTACTGCTCAGCTTCTTGCTATC  2445

Query  301   TACGACTCCGATCTCTACCATTCCAAGCTGGTTAGGTTTTACAGAAGAATTGGGTTCGAA  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2446  TACGACTCCGATCTCTACCATTCCAAGCTGGTTAGGTTTTACAGAAGAATTGGGTTCGAA  2505

Query  361   GAGGTGAAAGAAGTGAGTGGGTCGTCGATTGGAGACATGGCTGACATGTTAGTGTGGGGT  420
             |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  2506  GAGGTGAATGAAGTGAGTGGGTCGTCAATTGGAGACATGGCTGACATGTTAGTGTGGGGC  2565

Query  421   GGAGTTGGTACTCGCATGGATGCTAATATCCATCATCTCCTTCTTAAATGGTACAAAGTT  480
             |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct  2566  GGAGTTGGTACTCGCATGGATGCTAATATCCATCATCTTCTTTTTAAATGGTCCAAAGTT  2625

Query  481   TTCCTCAAATCACATTCTTAA  501
             |||||||||||||||||||||
Sbjct  2626  TTCCTCAAATCACATTCTTAA  2646



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5