BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914109
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50000.1 | Symbols: | methyltransferases | chr1:18515059-18... 1347 0.0
> AT1G50000.1 | Symbols: | methyltransferases | chr1:18515059-18517249
REVERSE LENGTH=1020
Length=1020
Score = 1347 bits (729), Expect = 0.0
Identities = 837/890 (94%), Gaps = 4/890 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGCTCTAGCGGCGGCTTCACGGCCACTGTTTTCCGATTTGCCGAATCTTGTTCGT 60
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 9 ATGAGAGCGCTAGCGGCGGCTTCACGGCCACTGTTTTCCGATTTGCCGAGTCTCGTTCGT 68
Query 61 TCATGGCTTCC-ACCTTCCAGCTTCAAGTCGTTTGCTTCTGTATCTTCGTCTCCACCGTC 119
||||||||||| | |||| |||||||| ||||||||| |||||||||||||||| |||||
Sbjct 69 TCATGGCTTCCGA-CTTCTAGCTTCAAATCGTTTGCTACTGTATCTTCGTCTCCTCCGTC 127
Query 120 GGATTCGGATCTCCGGAATCAATCTCGCGGTGGCCTTCCTCGATTCTTCTCCGATGATCT 179
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 128 GGATTTGAATCTCCGGAATCAATCTCGCGGTGGCCTTCCTCGATTCTTTTCCGATGATCT 187
Query 180 TCCATCTCGCAAGGGTGGAGTTGTTCGTGTTCAAGGCTCTGAGTTTTGGCATATGGCTAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TCCATCTCGCAAGGGTGGAGTTGTTCGTGTTCAAGGCTCTGAGTTTTGGCATATGGCTAA 247
Query 240 AGTTCTAAGACTGAAACAGGAGGACAGGGTAGAACTCTTTAATGGCAAAGGAGGTCTGGT 299
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 248 AGTTCTTAGACTGAAACAGGAGGACAGGGTAGAACTCTTTAATGGCAAAGGGGGTCTAGT 307
Query 300 AGAAGGCTGTATACAAAGCATAGATAAAACTGGAGTTGATTTTATCGCACAAGAAGATCA 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 308 AGAAGGCTGTATACAAAGCATAGACAAAACTGGAGTTGATTTTATCGCACAAGAAGATCA 367
Query 360 GAAGGTGATTCTTCCTCAGGGCATCCAGTGGCAGGTGTTTGCAGCTTTTGGAACTCTGAA 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 368 GAAGGTGATTCTTCCTCAGGGCATGCAGTGGCAGGTGTTTGCAGCTTTTGGAACTTTGAA 427
Query 420 GGGTGGTCGAGCGGATTGGCTGGTTGAGAAATGTACAGAACTTGGAGCGAGTAGTGTCAC 479
||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 428 GGGTGGTCGAGCGGATTGGCTAATTGAGAAATGTACAGAACTCGGAGCGAGCAGTGTCAC 487
Query 480 CCCACTTTTAACCGAAAGATCTTCCATAATCTCTGAAAACCGGGTTGATAGATTGGAACG 539
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 488 ACCACTTTTAACGGAAAGATCACCCATAATCTCTGAAAACCGGGTCGATAGATTGGAACG 547
Query 540 CGTTAGTTTTGCTGCGGCTAAGCAGTGCCAAAGGCTACATCAAATGGTATTGAACCCTCC 599
||||||||||||||| |||||||| |||||||| || |||||||||||| ||||||||||
Sbjct 548 CGTTAGTTTTGCTGCAGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTGAACCCTCC 607
Query 600 AATCAAATTTGATACCCTCTTGGGTCATATTTCCAAGTCAAAGTTATGTTTGGTTGCTAC 659
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 608 AATCAAATTTGGTACCCTCTTGGATCATATTTTGAAGTCAAAGTTATGTTTGGTTGCTAC 667
Query 660 AGCCGAAGCTACACCACTCCTGAATGCAGTAAACTCCTCAACAAAAGAAACCAGTGGAAT 719
||||||||||| ||| || || |||||||||||||||||| |||||||| |||| ||| |
Sbjct 668 AGCCGAAGCTAAACCTCTTCTTAATGCAGTAAACTCCTCAGCAAAAGAATCCAGCGGACT 727
Query 720 ATTAATCGTTGGACCAGAAGGCGACTTCACGAAGAAAGAGGTGGAGATGATGTTGGAAGC 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 728 ATTAATCGTTGGACCAGAAGGCGACTTTACGAAGAAAGAGGTGGAGATGATGTTGGAAGC 787
Query 780 AGGCAGCACAGCAGTTGGACTCGGACCGCACCGGTTGCGAGTTGAGACCGCAACCATTGC 839
|||| |||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 788 AGGCGGCACAGCAGTTGGACTGGGGCCACACCGGTTGCGAGTTGAGACCGCAACCATTGC 847
Query 840 TCTTCTTG-CAACTCTAGTGATGTGGTCTGACTCTCAAGAGACGGTCTAA 888
|||| ||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 848 TCTT-TTGGCAACTCTAGTGATGTGGTCTGACTCTCAAGAGATGATCTAA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5