BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914113
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50040.1 | Symbols: | Protein of unknown function (DUF1005)... 2102 0.0
AT3G19680.1 | Symbols: | Protein of unknown function (DUF1005)... 416 3e-115
> AT1G50040.1 | Symbols: | Protein of unknown function (DUF1005)
| chr1:18542130-18543948 FORWARD LENGTH=1614
Length=1614
Score = 2102 bits (1138), Expect = 0.0
Identities = 1308/1389 (94%), Gaps = 15/1389 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCGTGCTCTTTCGTACGTATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGAGG 60
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 107 ATGGATCCTTGCTCTTTCGTACGCATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGAGA 166
Query 61 TCA---TCGTCGTCA---TCG---TCTTCGTCATCGGGACCGTCTGTTTCGGATGTATCC 111
||| ||||| ||| ||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 167 TCACCGTCGTCATCATCGTCGTCTTCTTCTTCATCTGGACCGTCTGTTTCGGATGTATCC 226
Query 112 TCCGGTAATTGCTATTGTAAGATCAAATTCAAGAGTTTCCCACGCCAGATTGTTTCTGTT 171
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 227 TCTGGTAATTGCTATTGTAAAATCAAGTTCAAGAGTTTCCCACGCCAGATTGTTTCTGTT 286
Query 172 CCCGTTCTGTTACGAACCGAATCGGAATCAGAGTCTCGGTGTTGCTCCGGTAACGTCTCA 231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 287 CCCGTTCTGTTGCGAACCGAATCGGAATCAGAGTCTCGGTGTTGTTCCGGTAACGTCTCA 346
Query 232 ACCGTCGCTGCTTGCTTTAGTCTAAGCAAGTCTCAGATTGAGACGTCTCTTAAGAAGCCC 291
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 347 ACCGTCGCTGCTTGCTTTAGTCTAAGTAAGTCTCAGATTGAGACGTCTCTTAAGAAGGCT 406
Query 292 AAATGGAGTGTTCTCTCCGTCGAGGTTTACTCTCGCGGTGGTGCGTCGTGTGGATTCGTC 351
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 407 AAATGGAGTGTTCTCTCCGTCGAGGTTTACTCTCGCCGTAGTGCGTCGTGTGGATTTGTC 466
Query 352 GCTGCTTCCGGTGAGAAGCTGATTGGTCGGTTTGAGGTTACGCTTGATTTGAAGGCGGCG 411
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 467 GCTGCTTCCGGTGAGAAGCTGATTGGTCGGTTTCAGGTTACGCTTGATTTGAAGGCGGCG 526
Query 412 GAGACGAAGACGTGTTTCGCACACAACGGCTGGGTTGATTTGGGCACTAAATCGAAGAAT 471
||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GAGTCAAAGACGTGTTTGGCACACAACGGCTGGGTTGATTTGGGCACTAAATCGAAGAAT 586
Query 472 AAGAAGAAGTCCGGGTCGGATCCGGAGCTCCACGTTAGCGTACGGGTTGAACCCGACCCG 531
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 587 AATAAGAAGTCCGGGTCGGATCCTGAGCTCCACGTTAGCGTACGGGTTGAACCCGACACG 646
Query 532 AGATTTGTGTTTCAATTTGACGGCGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTTCAA 591
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 647 AGGTTTGTGTTTCAATTCGACGGCGAGCCCGAGTGTAGTCCTCAGGTTTTTCAAGTCCAA 706
Query 592 GGAAACACAAAACAAGCTGTTTTCACTTGCAAGTTCGGGTTCAGAAACTCCGGTGACCGC 651
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 707 GGAAACGCAAAACAAGCTGTTTTCACTTGCAAGTTCGGGTTCAGAAACTCCGGTGATCGG 766
Query 652 AATCTTAGTCTCAGCTTATCGTCGTTGACGAGTGGAAAGGAACAGTTTTTGAAAGAGAGA 711
|||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||
Sbjct 767 AATCTTAGTCTCAGCTTATCATCGGTGACAAGTGGAAAGGAACAGTTTTCAAAAGAGAGA 826
Query 712 AAAGGTTGGTCGATAACGATCCATGATCTATCTGGTTCACCAGTGGCTATGGCTTCAATG 771
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 827 AAAGGTTGGTCGATAACGATCCATGATCTCTCTGGTTCACCAGTAGCTATGGCTTCAATG 886
Query 772 GTCACACCTTTCGTACCATCTCCTGGTTCCAACCGCGTGTCACGGTCTAATCCTGGAGCT 831
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 887 GTCACACCTTTCGTACCATCTCCTGGTTCCAACCGCGTCTCTCGGTCTAGTCCTGGAGCT 946
Query 832 TGGCTAATCCTCAGACCTGATGGCTACACCTGGAAGCCATGGGGTCGCCTTCAAGCATGG 891
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 947 TGGCTAATCCTCAGACCTGATGGCTACACCTGGAAGCCATGGGTTCGCCTTCAGGCATGG 1006
Query 892 CGTGAGCCAGGCGTCTCCGACGTTCTAGGTTACCGTTTTGAGCTTTATAAAGACGGTATC 951
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1007 CGTGAACCAGGCGTCTCCGATGTTCTAGGTTACCGTTTCGAGCTTTATAAAGACGGTATC 1066
Query 952 GCCATTGCAGTCTCTGCTTCATCCTCGATCAGCACAAAACTTGGCGGGAGTTTTAGCATT 1011
|| |||||||||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 1067 GCTGTTGCAGTCTCTGCTTCCTCGTCGATCAGCACAAAACTTGGCGGGAGTTTCATCATT 1126
Query 1012 GATGGATCCACCTCTACAACTACGACTAGGACTGCTTCTTTGAGTAGCTCTGAAGGAAGT 1071
|||||||||| || | ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1127 GATGGATCCA-CT-T----CTACGACTACGACTGCTTCTTGGAGTAGCTCTGAAGGAAGT 1180
Query 1072 TTCGATCTTTCTTCCTGGTCAAGCATCAGATCATCAAGAACTGATTCAGGATCCGGGTCG 1131
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1181 TTCGATCTTTCTTCGTGGTCAAGCATCAGATCATCAAGAACTGATTCAGGATCGGGGTCG 1240
Query 1132 GATTTCAGGTTCTCACTGTCCCAAGCGCAACAAAACTTGGGGTTTGTGATGTCGACGAGG 1191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GATTTCAGGTTCTCACTGTCTCAAGCGCAACAAAACTTGGGGTTTGTGATGTCGACGAGG 1300
Query 1192 GTGGAAGGAGTGGAGAAACAGAGCAAGCCTAAGGTGGAGGTAGGTGTGAAGCACGTGACT 1251
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GTGCAAGGAGTGGAGAAACAGAGCAAGCCTAAGGTGGAGGTAGGTGTGAAGCACGTGACT 1360
Query 1252 TGTAGGGAGGATGCGGCGGCTCACGTGGCACTATCAGCGGCGGTGGATCTAAGCATGGAT 1311
|||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1361 TGTACGGAGGATGCGGCGGCGCACGTGGCACTAGCAGCGGCGGTGGATCTAAGCATGGAT 1420
Query 1312 GCTTGTAGGCTCTTCTCTCATAAGCTAAGAAAAGAGCTGAGACAGCTAAGTCGTGTAGAT 1371
|||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||
Sbjct 1421 GCTTGTAGGCTCTTCTCTCAGAAGCTAAGAAATGAGCTGAGACAGCCAAGTCGTGTTGAT 1480
Query 1372 GTCGTTTGA 1380
||||||||
Sbjct 1481 ATCGTTTGA 1489
> AT3G19680.1 | Symbols: | Protein of unknown function (DUF1005)
| chr3:6840281-6842320 FORWARD LENGTH=1856
Length=1856
Score = 416 bits (225), Expect = 3e-115
Identities = 541/685 (79%), Gaps = 56/685 (8%)
Strand=Plus/Plus
Query 1 ATGGATCCGTGCTCTTTCGTACGTATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGAGG 60
||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||| |
Sbjct 168 ATGGATCCGTGCTCTTTCGTACGGATCATAGTCGGTAACTTGGCCGTTAGGTTTCCGTCG 227
Query 61 TCATCGTCGTCATCGTCTTCGTCATCGGGACCGTCTGTTT-CGG-ATGTATCCTCCGG-- 116
|| || || || || ||||| ||||| ||||||||||||| ||| || |||| |||
Sbjct 228 TCGTCTTCTTCTTCTTCTTCCTCATCAGGACCGTCTGTTTCCGGAATCAATCCAACGGCT 287
Query 117 --TAATTGCTATTGTAAGATCAAATTCAAG-AGTTTCCCACGCCAGATTGTTTCTGTTCC 173
||| || || ||||| |||| ||||||| | ||| || || ||||||||||||||||
Sbjct 288 CCTAACTGTTACTGTAAAATCAGATTCAAGAACTTT-CCTCGTGAGATTGTTTCTGTTCC 346
Query 174 CGTTCTGTTACGAACCGAATCGGAATCAGAGTCTCGGTG-T--TGCTCCGGTAACGTCTC 230
||| |||| ||||| ||||| ||||| ||| |||| || | | |||||||||||| ||
Sbjct 347 GGTTATGTTCCGAACTGAATCTGAATCCGAGACTCGTTGCTCCTCCTCCGGTAACGTATC 406
Query 231 AACCGTCGCTGCTTGCTTT-AGTCTAAG-CAAGTCTCAGATTG-AGACGTCTCTT-AAGA 286
||||| |||||||| ||| ||| |||| ||| ||||||| | || |||| || ||||
Sbjct 407 CACCGTTGCTGCTTG-TTTCAGTTTAAGTAAAG-CTCAGATCGAAG-CGTC-GTTGAAGA 462
Query 287 AGCCCAAATGGAGTGTTCTCTCCGTCGAGGTTTACTCTCGCGG---T------GGTG-CG 336
| || |||| |||||||||||||| |||| ||| || ||||| | || | ||
Sbjct 463 AACCTAAATTTAGTGTTCTCTCCGTTGAGGCTTATTCCCGCGGAAATAGCGACGGAGACG 522
Query 337 TC-GTG-T----G-GATTC--GTCG-CT-GCTTC--C-GGTGAGAAGCTGATTGGTCGGT 382
| ||| | | | || || | || ||| | | ||||||||| || ||||||| |
Sbjct 523 ACGGTGTTAGCGGCGCGTCGTGTGGACTCGCTACGGCGGGTGAGAAGTTGCTTGGTCGAT 582
Query 383 TTGAGGTTACGCTTGATTTGAAGGCGGCGGAGACGAAGACG-TGTTTCGCACACAACGGC 441
|||||||| ||||||||||||| ||||||||||||||| | | ||| || || |||||
Sbjct 583 TTGAGGTTTCGCTTGATTTGAAATCGGCGGAGACGAAGA-GTTTTTTGGCGCATAACGGT 641
Query 442 TGGGTTGATTTGGGC-ACTAAATCGAAGAA-TAAGAAG-AAGTCCGGGTCGGATCCGGAG 498
||||||| ||| | | || || ||| || ||| || || | || || |||||||||
Sbjct 642 TGGGTTGCTTT-GCCGTCT-AA--GAA-AACGAAG-AGTAAAACTGGATCCGATCCGGAG 695
Query 499 CTCCACGTTAGCGTACGGGTTGAACCCGACCCGAGATTTGTGTTTCAATTTGACGGCGAG 558
|||||||||||||||||||| ||||| ||||||||||| |||||||| || ||||| |||
Sbjct 696 CTCCACGTTAGCGTACGGGTCGAACCTGACCCGAGATTCGTGTTTCAGTTCGACGGTGAG 755
Query 559 CCTGAGTGTAGTCCTCAGGTTTTTCAAGTTCAAGGAAACACAAAACAAGCTGTTTTCACT 618
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 756 CCTGAGTGTAGTCCTCAGGTTTTTCAAGTTCAAGGAAACACAAAGCAAGCCGTGTTCACT 815
Query 619 TGCAAGTTCGGGT-TCAGAAACTCC 642
||||| ||||| | | |||||||||
Sbjct 816 TGCAAATTCGGCTCT-AGAAACTCC 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5