BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914114

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39670.2 | Symbols:  | Radical SAM superfamily protein | chr...   368    1e-101
  AT1G50050.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   176    1e-43 


> AT2G39670.2 | Symbols:  | Radical SAM superfamily protein | chr2:16534233-16537318 
FORWARD LENGTH=1698
Length=1698

 Score =  368 bits (199),  Expect = 1e-101
 Identities = 247/269 (92%), Gaps = 8/269 (3%)
 Strand=Plus/Plus

Query  29    CTTACAACCCGATAGAAGGATCAGAGCAGAAGCGACCTTACAAGAAAGCGGTCCTAGCGT  88
             |||||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||
Sbjct  1137  CTTACAACCCGATAGAGGGATCAGAGTACCAGCGACCTTACAAGAAAGCGGTCCTAGCGT  1196

Query  89    TTGCAGCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTG  148
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1197  TTGCAGCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTG  1256

Query  149   ATGCGAGTGCTGCTTGTGGTCAGCTGAGAAATAAGTTTCAGAAAAGCCCTTTACTTGCTG  208
             |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct  1257  ATGCAAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTTTGCTTACTG  1316

Query  209   AGACTGATGGTCAAGAGTCTCAACCAGAAGCA-A-GCTGTCGCATGTTGATG-CCATGGA  265
             |||| ||| ||||||||||||| ||||| ||| | |||||||| |||||||| || ||||
Sbjct  1317  AGACGGATAGTCAAGAGTCTCAGCCAGATGCAGAAGCTGTCGCTTGTTGATGTCC-TGGA  1375

Query  266   TT--ACAAATCTTC-GGTTTTGCCACTGG  291
             ||  |||||| ||| |||||||||| |||
Sbjct  1376  TTGCACAAAT-TTCCGGTTTTGCCATTGG  1403


> AT1G50050.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr1:18546165-18549046 FORWARD LENGTH=681
Length=681

 Score =  176 bits (95),  Expect = 1e-43
 Identities = 108/114 (95%), Gaps = 2/114 (2%)
 Strand=Plus/Plus

Query  94   GCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTG-ATGC  152
            ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  460  GCTGCATTGAAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTGGA-GC  518

Query  153  GAGTGCTGCTTGTGGTCAGCTGAGAAATAAGTTTCAGAAAAGCCCTTTACTTGC  206
            ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct  519  GAGTGCTGCTTGTGGTCAGTTGAGAAATAAGTTTCAGAAAAGCCCTTCACTTGC  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5