BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914130
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07660.1 | Symbols: SMC6A | structural maintenance of chromo... 732 0.0
> AT5G07660.1 | Symbols: SMC6A | structural maintenance of chromosomes
6A | chr5:2422839-2429912 FORWARD LENGTH=3177
Length=3177
Score = 732 bits (396), Expect = 0.0
Identities = 439/460 (95%), Gaps = 2/460 (0%)
Strand=Plus/Plus
Query 1 GATGCTTTTAAGCCTGAAATATATGGTGATACTCTGATTATTGAACGCAGGATATCTGAT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 307 GATGCTTTCAAGCCTGAAATATATGGTGATACTCTGATTATTGAACGCAGGATCTCTGAT 366
Query 61 TCTACTAGTTTAACGGTTCTCAAGGATCATCAAGGAAGAAAAATATCAAGCCG-AAGAGA 119
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 367 TCCACTAGTTTAACGGTTCTCAAGGATCATCAAGGAAGAAAAATATCTAGCCGAAAG-GA 425
Query 120 GGAGCTACGGCAACTTGTTGAACATTATAATATTGATGTTGAGAATCCCTGTGTGATAAT 179
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GGAGCTACGGGAACTAGTTGAACATTATAATATTGATGTTGAGAATCCCTGTGTGATAAT 485
Query 180 GAGTCAAGACAAGAGCAGGGAGTTCTTACATTCTGGAAACGACAAAGACAAATTCAAGTT 239
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 486 GAGTCAAGACAAGAGCAGGGAGTTCTTACATTCTGGTAACGACAAAGATAAATTCAAGTT 545
Query 240 CTTTTATAAAGCAACCCTTCTTCAGCAAGTCGATGATCTTCTTCAAAGTATTGGCATTAA 299
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 546 CTTTTATAAAGCAACCCTTCTTCAGCAAGTCGATGATATTCTTCAAAGTATTGGTACAAA 605
Query 300 GTTGAAATCTGCAAATGCTCTTATGGATGAGATGGAGAAGACCATAAAACCAATAGAAAA 359
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 606 GTTGAATTCTGCAAATGCTCTTTTGGATGAGATGGAGAAGACCATAAAACCAATAGAAAA 665
Query 360 GGAGATCAGTGAATTGCTTGAAAAGATAAAGAATATGGAACATGTTGAAGAAATAACTCA 419
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GGAGATCAATGAGTTGCTTGAAAAGATAAAGAATATGGAACATGTTGAAGAAATAACTCA 725
Query 420 ACAGGTTCTGCATCTGAAAAATAAGCTAGCTTGGTCATGG 459
||||||||||||| ||||||| || |||||||||||||||
Sbjct 726 ACAGGTTCTGCATTTGAAAAAGAAACTAGCTTGGTCATGG 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5