BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914136
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2571 0.0
AT1G50280.1 | Symbols: | Phototropic-responsive NPH3 family pr... 198 1e-49
> AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:18622026-18624250 FORWARD LENGTH=2225
Length=2225
Score = 2571 bits (1392), Expect = 0.0
Identities = 1660/1790 (93%), Gaps = 15/1790 (1%)
Strand=Plus/Plus
Query 11 AGCTCAAAGCCTTGCTCGATCTTCCATTACTGTTTCTTCATCTCAAGCAGATCCATTGCT 70
|||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 26 AGCTCAAAACATTGCTTGATCTTCCATTACACTTTCTTCATCTCAAGCAGATCCATTGCT 85
Query 71 TAGTCCTCACTTCTCCGATCTTCTACACTCGCCGCGATCTCTTTCTCTCCCGTCTTCTCC 130
|| |||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 86 TACTCCTAACTTCTCCGATATTCTATACTCGTCGCGATCTCTTTCTCTCACGTCTTCTCC 145
Query 131 GT--C-GCTGCACCGCCGCTACTCAATTCCGGTACGCTCGTCGTTTATTATGTCAAATCC 187
|| | ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 146 GTCGCTGCTGCACCGCCGCAACTCAATTCCGCTACGCTCGTCGTTTATTATGTCAACTCC 205
Query 188 AAACTCCCAGCATTCAACTATGGGATTCGCTCGTTGGTCACTTCTCCGGTCGGG-TTACT 246
|||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 206 AAACTCTGAGCATTCAACTATGGGATTCGCTCATTGGTCACTTCTCCGG-CGGGATTACT 264
Query 247 CTCAACCGTCGGTTATCGTTTCTTTCTTATCGTCAAATGCGGCGAAACGGCGTCGTCCCT 306
||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||
Sbjct 265 CTCAACCGTCGGTTATCATTTCTTGCTTATCGTCATATGCGGCGAAACGGCGTCATCCCT 324
Query 307 AGCCGCCACACGTTTCCTCCGCTTCTCAAGGCGGTTTTCAAACTGAGAGACGCTAATCCG 366
||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||
Sbjct 325 AGCCGCCACACGTTTCCTCCGCTTCTCAAAGCGGTTTTCAAACTGAGAGACTCGAACCCG 384
Query 367 TTTCAGTTTCATGCTCATATC-TTGAAATTCGGGTTCGATTCGGATCTTTTTGTGAGGAA 425
||||||||||||||||||||| || ||||||||||| |||||||||| |||||| |||||
Sbjct 385 TTTCAGTTTCATGCTCATATCGTT-AAATTCGGGTTGGATTCGGATCCTTTTGTCAGGAA 443
Query 426 TTCGTTGATTTCGGGTTATTCTAATTGTGGGTTATTCGAATTTGGAAGCCGTGTTTTTGA 485
||||||||||||||||||||||| || |||||||||||| |||| ||| ||| |||||||
Sbjct 444 TTCGTTGATTTCGGGTTATTCTAGTTCTGGGTTATTCGATTTTGCAAGTCGTCTTTTTGA 503
Query 486 TGGAACTGAAGATAAGGACGTGGTTTCTTGGACTGCGATGATTGATGGGTTTGTGAGAAA 545
|||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 504 TGGAGCTGAAGATAAGGACGTGGTTACTTGGACTGCAATGATTGATGGGTTTGTGAGAAA 563
Query 546 CGATTCTTCTTTGGAAGCAATGACGTACTTCGTGGAGATGAAGAGGTCTGGAGTCGCGGC 605
| |||| ||| |||||||||| ||| |||||||||||||||| | |||||||||||||
Sbjct 564 TGGTTCTGCTTCGGAAGCAATGGTGTATTTCGTGGAGATGAAGAAGACTGGAGTCGCGGC 623
Query 606 TAACGAAATGACTGTTGTTAGCGTCCTGAAAGCTACACGGAAGGCTGAAGATGTTCGATT 665
|||||||||||| |||||||||||| |||||||| || |||||| |||||||||||||||
Sbjct 624 TAACGAAATGACCGTTGTTAGCGTCTTGAAAGCTGCAGGGAAGGTTGAAGATGTTCGATT 683
Query 666 TGGGAGAAGCATTCATGGGTTTTACTTAGAAGCAGGAAGAGTGAGGTGTGATGTGTTCAT 725
|||||||||| |||||||| ||||||||||| |||| ||||||| || |||||||||||
Sbjct 684 TGGGAGAAGCGTTCATGGGCTTTACTTAGAAACAGGGAGAGTGAAATGCGATGTGTTCAT 743
Query 726 AGGAAGTTCTCTAGTAGATATGTATGGGAAATGTGGTTGTTATGATGATGCCCAGAAAGT 785
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 744 AGGAAGTTCTCTAGTAGATATGTATGGGAAATGTAGTTGTTATGATGATGCCCAGAAAGT 803
Query 786 GTTCGACGAAATGCCTAGCAGAAACGTAGTTACTTGGACCGCATTGATTGCTGGATACGT 845
|||||| |||||||||||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 804 GTTCGATGAAATGCCTAGCAGAAACGTGGTTACTTGGACGGCGTTGATTGCTGGATATGT 863
Query 846 GCAAGGCCGTTGCTTCGAGAAAGGGATGTTTGTTTTCGAAGAGATGTTAAAGAGTGATGT 905
|||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 864 GCAAAGCCGTTGCTTCGATAAAGGGATGTTGGTTTTCGAGGAGATGTTAAAGAGTGATGT 923
Query 906 TGCACCTAATGAGAAGACTCTAAGCAGTGTTCTTTCGGCATGCGCTCACGTAGGGGCACT 965
||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 924 TGCGCCTAATGAGAAGACTCTAAGCAGTGTTCTTTCGGCGTGCGCTCATGTCGGGGCACT 983
Query 966 TCACCGAGGAAGAAGGGTGCATTGTTATGTGATTAAGAATTCGATTGAGATAAACACTAC 1025
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 984 TCACCGAGGAAGAAGGGTGCATTGTTATATGATTAAGAATTCGATTGAGATAAACACTAC 1043
Query 1026 AG-TGGGAACAACATTGATTGATTTTTATGCCAAGTGCGGGTGTTTAGAGGAAGCTATA- 1083
|| | ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1044 AGCT-GGAACTACATTGATTGATCTTTATGTCAAGTGCGGGTGTTTAGAGGAAGCTATAC 1102
Query 1084 TTGGTTTTCGAGAGACTTCGTGaaaaaaaTGTGTATACTTGGACAGCGATGATTAATGGA 1143
|| ||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 1103 TT-GTTTTTGAGAGACTTCATGAGAAAAATGTGTATACTTGGACCGCGATGATTAATGGA 1161
Query 1144 TTTGCAGCGCATGGATATGCAATAGGCGC-TGTTGATCTCTTTCATACCATGTTGAGTAG 1202
|||||||| || |||||||| | || || | ||||||||||| ||||||||||||||||
Sbjct 1162 TTTGCAGCACACGGATATGCTAGAGATGCAT-TTGATCTCTTTTATACCATGTTGAGTAG 1220
Query 1203 TCATGTTTCACCAAATGAAGTTACTTTCATCGTTGTCTTAAGCGCCTGCGCTCATGGAGG 1262
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 1221 TCATGTTTCACCAAATGAAGTTACTTTCATGGCTGTCTTAAGTGCCTGCGCTCATGGAGG 1280
Query 1263 CCTTGTGGAAGAGGGTCGAAGGCTTTTCCTAAGCATGAAGGAACGTTTCAATTTGGAGCC 1322
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 1281 TCTTGTGGAAGAGGGTCGAAGGCTTTTCCTGAGCATGAAGGGACGTTTCAATATGGAGCC 1340
Query 1323 AAAAGCGGATCACTATGCGTGTATGGTTGATTTATTTGGAAGAAAAGGTTTGCTAGAAGA 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 AAAAGCGGATCACTATGCGTGTATGGTTGATTTATTTGGAAGAAAAGGTTTGCTAGAAGA 1400
Query 1383 GGCAAAAGCTTTGATAGAGAGAATGCCAATGGAGCCAACAAATGCGGTATGGGGAGCTCT 1442
||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1401 GGCGAAAGCTTTGATAGAAAGAATGCCAATGGAGCCAACAAATGTGGTATGGGGAGCTCT 1460
Query 1443 GTTCGGGTCTTGTTTGATACACAAAGACTATGAGTTAGGTAAATACGCAGCCTCCCGTGT 1502
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GTTCGGCTCTTGTTTGTTACACAAAGACTATGAGTTAGGTAAATACGCAGCCTCCCGTGT 1520
Query 1503 GATCAAGCTGCAACCTAGTCACAGCGGGAGATACACACTCTTGGCTAATTTGTACTCGGA 1562
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1521 GATCAAGCTGCAACCTAGTCATAGTGGGAGATACACTCTCTTGGCTAATTTGTACTCGGA 1580
Query 1563 ATCCCAAAACTGGGATGATGTCGCTCGGGTAAGAAAGCAAATGAAAGATCAACAGGTGGT 1622
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 ATCCCAAAACTGGGATGAAGTCGCTCGGGTAAGAAAGCAAATGAAAGATCAACAGGTGGT 1640
Query 1623 GAAATCACCGGGATGTAGCTGGATCGAAGTGAAAGGTAAGCTTCATGAATTCATAGCTTT 1682
|||||| || |||| ||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 1641 GAAATCGCCAGGATTTAGTTGGATCGAAGTGAAAGGCAAGCTTTGTGAATTCATAGCTTT 1700
Query 1683 CGATGATAAGAAACCCCTTGAATCTGATGATTTGTACAAGACTCTCGACAAC-GTAGGGG 1741
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1701 CGATGATAAGAAACCCCTTGAATCTGATGATTTGTACAAGACTCTCGACA-CTGTTGGGG 1759
Query 1742 TGCAAATGAGATTGCCAGATGAATTGGAAGATTTGACTTCTCAATCTTGA 1791
|||||||||||||||||||||||||||||||| ||||| || |||| |||
Sbjct 1760 TGCAAATGAGATTGCCAGATGAATTGGAAGATGTGACTGCTGAATCATGA 1809
> AT1G50280.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr1:18623698-18626395 REVERSE LENGTH=1840
Length=1840
Score = 198 bits (107), Expect = 1e-49
Identities = 128/138 (93%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 1655 AAGGTAAGCTTCATGAATTCATAGCTTTCGATGATAAGAAACCCCTTGAATCTGATGATT 1714
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 AAGGCAAGCTTTGTGAATTCATAGCTTTCGATGATAAGAAACCCCTTGAATCTGATGATT 1781
Query 1715 TGTACAAGACTCTCGACAAC-GTAGGGGTGCAAATGAGATTGCCAGATGAATTGGAAGAT 1773
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1780 TGTACAAGACTCTCGACA-CTGTTGGGGTGCAAATGAGATTGCCAGATGAATTGGAAGAT 1722
Query 1774 TTGACTTCTCAATCTTGA 1791
||||| || |||| |||
Sbjct 1721 GTGACTGCTGAATCATGA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5