BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914141

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50325.1 | Symbols:  | Plant invertase/pectin methylesterase...   462    9e-130


> AT1G50325.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:18639874-18640488 REVERSE 
LENGTH=615
Length=615

 Score =  462 bits (250),  Expect = 9e-130
 Identities = 360/412 (87%), Gaps = 11/412 (3%)
 Strand=Plus/Plus

Query  1    ATGAAATCATCCCCTCAAATTGCAACATTGGATATTTCTGATCTCGCCAAATTTTTGATC  60
            |||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||
Sbjct  172  ATGAAATCATCCACTCAAGTTGCAACATTGGATACTTATGATCTCGCCAAATTTTTGATC  231

Query  61   AATTATGATTTTCAAAAAACCTTAGATCTGATGAAGCATTTCCAGTCACTCACAAACAGC  120
            ||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct  232  AATTATGATTTTCAAAACACCTTTGATCTAATAAAGCATTTCCAGTCACTCACAAACAGC  291

Query  121  ACAACCGATCGCAGTTCTAAGGATTCTTATAAGATATGTTCAGATCTTTTTAGCCTTGGT  180
            |||||||||| ||||||||||| ||||||| || |||||| | |||||||||  |||   
Sbjct  292  ACAACCGATCCCAGTTCTAAGGGTTCTTATGAGCTATGTTTACATCTTTTTAATCTT---  348

Query  181  ATCCATTCGCTTGAAATCGCTTTTAAAGCTTTGACAACCAATGACTATGACACCTTAAAC  240
            ||| || | ||||||| |||  ||||||||||| ||||||||||||||||||| ||||||
Sbjct  349  ATCAATCCTCTTGAAACCGCACTTAAAGCTTTGGCAACCAATGACTATGACACTTTAAAC  408

Query  241  AGGACTGTTGGTAATATGTCTGACTAT-GCGGA-GGACTGTGGAAGCGAGCTGTCAAGTG  298
            |||| ||||| |  ||||||| | | | ||| | ||| |||| |||||||||||||||||
Sbjct  409  AGGAATGTTGATGCTATGTCTCAAT-TCGCG-ATGGAATGTGAAAGCGAGCTGTCAAGTG  466

Query  299  TTATCAAGCCTATTCCACAGCTCTT-AAAAGGGGTTTCTATTGTCCAAAATGTATCTGAC  357
            | ||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||| |||
Sbjct  467  TCATCAAGCCTATTCCAAAGCTCTTGAAAAGGG-TTTCTATCGTCGAAAATGTATCCGAC  525

Query  358  ATT-TTTCTTGTAATTTTGGAATGTTTTCTAAGAAAAGAAAAAACTTTATGT  408
            ||| ||| |||||||| ||||||||||| ||||||||||| |||||| ||||
Sbjct  526  ATTATTT-TTGTAATTGTGGAATGTTTTTTAAGAAAAGAAGAAACTTCATGT  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5