BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914143
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50330.1 | Symbols: | pseudogene, similar to pectin methyle... 800 0.0
> AT1G50330.1 | Symbols: | pseudogene, similar to pectin methylesterase,
blastp match of 57% identity and 9.8e-69 P-value
to GP|20269071|emb|CAD29733.1||AJ441325 pectin methylesterase
{Sesbania rostrata} | chr1:18644317-18645154 REVERSE LENGTH=838
Length=838
Score = 800 bits (433), Expect = 0.0
Identities = 619/707 (88%), Gaps = 19/707 (3%)
Strand=Plus/Plus
Query 403 GCCATCGATGGAGATTGGTTCATGGCCCAGGATATTTGGATACAGAACACGGCTGGACCG 462
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 140 GCCATCGATGGAAATTGGTTCATGGCCCAGGATCTTTGGATACAGAACACGGCTGGACCA 199
Query 463 GCAAAGGGACAGGCTGTTGCTCTTCGAGTTAGCGGTAATTATGTAGTCATCTATCAGTGT 522
||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||||
Sbjct 200 GCAAAGGGACAGGCTGTTGCTCTTCGAGTGAGCGGTGATGCTGTAGTCATCTATCGGTGT 259
Query 523 CGCATTGATGCTTATCAGGATACACTCTATGCCCATTCAAACACACAATTTTACCGTGAC 582
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 260 CGCATTGATGCTTATCAGGATACCCTCTATGCCCATTCATACAGACAATTTTACCGTGAC 319
Query 583 TGCTTCATCACGGGTACCGTAGACTTCATATGCGGACGTGCATCAGCAGTTTTCCAAAAC 642
|||||||||||||| |||||||||||||| | ||| | ||| |||||| |||| ||||||
Sbjct 320 TGCTTCATCACGGGCACCGTAGACTTCATTTTCGGTCATGCCTCAGCAATTTTTCAAAAC 379
Query 643 TGTCAGA-TTGAGGCCCGAAAGCCAACGGAAGGACAGAGTAACGTCATAACTGCTCAACA 701
|||| || |||||||||| ||||||| |||||||||||| || || ||||||||||||||
Sbjct 380 TGTC-GAATTGAGGCCCGGAAGCCAATGGAAGGACAGAGCAATGTTATAACTGCTCAACA 438
Query 702 ACGTGGCAAGGATGACAAACATTCGGG-TTTTACATTTCAGAACTGCAGTATCAA-GGCG 759
| ||| |||| | | ||| |||| |||| || ||||||| |||||||| || |||
Sbjct 439 AAGTGACAAGCCGGGTA--CAT-CGGGGTTTT-CAATTCAGAATTGCAGTAT-AACGGCA 493
Query 760 AGTTCAGATCTTGCTCCACTAAAAAGAATGGTGAAAACGTTCCTGGGAAGACCGTGGGGT 819
||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 494 AGTTCAGATCTTGTTCCAGTAAAAAGAATGGTGAAGACGTTCTTGGGAAGACCGTGGGGT 553
Query 820 GATCTCTCAACTGTGGTGTTCATGGAATCATATATGGATGATTTGATAGATCCTACTGG- 878
||| ||||||| || ||||| ||||| || ||| |||||||| |||||||||| | |||
Sbjct 554 GATTTCTCAACAGTAGTGTTTATGGAGTCTTATCTGGATGATATGATAGATCCAA-TGGG 612
Query 879 ATGGACTCCGTGGAATAGCAGCACCACTAG-ACGATTGTCCACAATATTCTATGGAGAAT 937
||||||||||||||||||||||||||| || ||| ||||||||| ||| ||||||||| |
Sbjct 613 ATGGACTCCGTGGAATAGCAGCACCAC-AGGACGTTTGTCCACACTATACTATGGAGAGT 671
Query 938 ATCGAAA-CAAAGGCCCCGGAGCAAACACAAGCCAGAGAGT-CGACTGGAAGGGCTTCAA 995
| | ||| |||||||||| |||||||||||||||||||||| || ||| ||||| |||||
Sbjct 672 A-CAAAAACAAAGGCCCCAGAGCAAACACAAGCCAGAGAGTTCG-CTGAAAGGGGTTCAA 729
Query 996 GGTAATTACCGATCCGATAGAAGCGGGCAAGTTTACTGTTGGAGAA-TTCATAAACAGAG 1054
| |||| |||||||||||||||||| ||||||||||||||| ||| || ||||| | ||
Sbjct 730 GATAATAACCGATCCGATAGAAGCGAACAAGTTTACTGTTGG-GAAGTTGATAAATAAAG 788
Query 1055 ACTCTTGGCTGAACGCCACCGGAGTTCCGTTTTACGAGGGTCTCTGA 1101
|| | |||||||||||||||||| |||||| |||||||||| |||
Sbjct 789 ACCCGTGGCTGAACGCCACCGGAATTCCGTACAACGAGGGTCTTTGA 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5