BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914174
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50630.1 | Symbols: | Protein of unknown function (DUF3537)... 2058 0.0
AT3G20300.1 | Symbols: | Protein of unknown function (DUF3537)... 920 0.0
> AT1G50630.1 | Symbols: | Protein of unknown function (DUF3537)
| chr1:18751456-18753669 REVERSE LENGTH=1660
Length=1660
Score = 2058 bits (1114), Expect = 0.0
Identities = 1285/1365 (94%), Gaps = 21/1365 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGACATCGACATCGACGTCGGGAAAGAGCCGCTGATAAACCAT--GAA-AACAAC 57
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 101 ATGGCGGACATCGACATCGCCGTCGGGAAAGAGCCGCTGATAAACCATGAGAACAACAAC 160
Query 58 AACAAGAAGAAGATCTTCAATCGCTGCGTCTCCCACCAACAAGACGAGCTACACAGCTTC 117
|||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 161 AACACGAACAAGATCTTCAATCGCTGCGTTTCACACCAACAAGACGAGCTACACAGCTTC 220
Query 118 CGAAAATACCTAAGATGGATGTGCGTAGATCACTCAAGTCCATGGACAGCGATTCTCTCT 177
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 221 CGCAAATACCTAAGGTGGATGTGTGTAGATCACTCTAGTCCATGGACAGCGATTCTCTCT 280
Query 178 TGGACCGTGTTCGTCGTCTTCACCCTCGTCGTTCCTGCGATCTCTCACTTCCTTCTCGCT 237
|||||| ||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 281 TGGACCATGTTCATCGTCTTCACACTCGTCGTTCCGGCGATCTCTCACTTCCTCCTCGCT 340
Query 238 TGCGCCGATTGCGACAGTTACCATTCAAGACCTTATGATTCCGTTGTTCAGCTTTCCCTA 297
|| || ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 341 TGTGCTGATTGCGACAGTTACCATTCAAGACCTTACGACTCCGTCGTTCAGCTTTCTCTA 400
Query 298 AGCAGCGTCGCCACCGTCTCTTTCCTCTGTCTCACCAGATTCGTTAGCAAATACGGTCTC 357
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 401 AGCAGCGTCGCCACCGTCTCTTTCCTCTGTCTCACCAGATTCGTTAGCAAGTATGGTCTT 460
Query 358 CGACGATTCCTCTTCTTTGATAAACTCTGGGACGAGAGCGAAACTGTTCGACGAAATTAT 417
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 461 CGACGCTTCCTCTTCTTTGATAAACTCTGGGACGAGAGCGAAACCGTTCGACGAAATTAT 520
Query 418 ACCAATCAACTCAATACTTCGCTTCATATTGTGTCCTACTTTGTGATCCCTTGTTTCTCA 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 521 ACCAATCAACTCAATACTTCGCTTCATATTGTGTCCTACTTTGTGATTCCTTGTTTCTCA 580
Query 478 GCAATGAGTGCATACAAAATTTGGTGGTACGCATCAGGTGGATCTCGAATACCGTTTTTA 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 581 GCAATGAGTGCATACAAAATTTGGTGGTACGCTTCAGGTGGATCTCGAATACCTTTTTTA 640
Query 538 GGAAACGTTGTGTTAAGTGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTTTAT 597
||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 641 GGAAATGCTGTCTTAAGCGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTATAC 700
Query 598 CGAACAACCGTAATCTTCCTTGTTTGTGTTCTCTTTCGTCTCATTTGCCATCTTCAGATC 657
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 701 CGAACAACCGTAATCTTCCTTGTTTGTGTTCTCTTCCGTCTCATTTGCCATCTTCAGATC 760
Query 658 CTTCGTCTTCAAGACTTTGCTAAGCTTTTTCAGATTGATTCAGATGTTGGTTCTATATTG 717
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 761 CTTCGTCTTCAAGACTTTGCTAAGCTCTTTCAGATTGATTCAGATGTTGGTTCTATCTTG 820
Query 718 TCTGAACATCTTCGTATTAGACGTCATCTTAGAATCATCAGCCATAGATATCGTTCTTTC 777
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 821 TCTGAACATCTTCGTATCAGACGTCATCTTAGAATCATTAGCCATAGATATCGTTCTTTC 880
Query 778 ATTCTATGTTTATTGATTCTTGTTACTGGAAGTCAGTTTTCTTCTCTGCTTATTACTACC 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 881 ATTCTATGTTTATTGATTCTAGTTACTGGAAGTCAGTTTTCTTCTCTGCTTATTACTACC 940
Query 838 AAAGCTTACACTGAAGTCAATATGTACAGAGCTGGAGAACTCGCTCTTTGTTCGATGACA 897
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 941 AAAGCCTACACTGAAGTCAATATCTACAGAGCTGGAGAACTCGCTCTTTGTTCTATGACA 1000
Query 898 TTAGTCACTGCACTTCTGATACTATTACGAAGTGCATCAAAGATCACACATAAGGCTCAA 957
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1001 TTAGTTACTGCACTTCTGATACTATTACGAAGTGCATCAAAGATCACACACAAGGCTCAG 1060
Query 958 GCTGTGACATGTTTAGCTGCAAAATGGCATGTATGCGCGACGTTAGAATCCTTTGATCAG 1017
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1061 GCTGTGACATGTTTAGCTGCGAAATGGCATGTATGCGCCACGTTAGAATCCTTTGATCAG 1120
Query 1018 ACAGTAGA-T-----G----GA--G-AGA--CTCCAACTTTGGTTGCTAGAAACAACAAC 1062
|||||||| | | || | ||| ||||||||||||||||||||||||||||
Sbjct 1121 ACAGTAGAATCCTTTGATCAGACAGTAGAGACTCCAACTTTGGTTGCTAGAAACAACAAT 1180
Query 1063 AACGATAACAACAATGGCCATGATGTTATTACGTTGACAGAATCAGACAGCGACGAGTAT 1122
||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1181 ---GATAACAACAATGTCCATGATGTTGTTACGTTGACAGAATCAGACAGTGACGAGTAT 1237
Query 1123 GGTGATGAAGAAGATGATCTAGACAATAATAACATTATTCCTGCTTATGCTTTCAGTACC 1182
|||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 1238 GGTGATGAAGAAGATGATCTAGACAATAATGACATCATTCCTGTTTATGCTTTCAGTACC 1297
Query 1183 ATGTCATTCCAAAAACGGCAAGCTCTAGTGAGTTATTTTGAGAATAACAGAGCAGGAATC 1242
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1298 ATGTCATTCCAAAAACGGCAAGCTCTAGTGAGTTATTTCGAGAATAACAGCGCAGGAATC 1357
Query 1243 ACAGTGTATGGGTTTACACTTGATAGAGGTACTCTCCATACAATCTTTGGACTTGAATTG 1302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1358 ACAGTGTATGGGTTTACACTTGATAGAGGTACTCTCCATACAATCTTCGGACTTGAATTG 1417
Query 1303 TCTCTTGTTCTCTGGCTTCTCGGTAAAACCATTGGAATTTCTTGA 1347
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1418 TCTCTTGTTCTCTGGCTTCTTGGTAAAACCATTGGAATTTCTTGA 1462
> AT3G20300.1 | Symbols: | Protein of unknown function (DUF3537)
| chr3:7079617-7081921 REVERSE LENGTH=1686
Length=1686
Score = 920 bits (498), Expect = 0.0
Identities = 1036/1290 (80%), Gaps = 59/1290 (5%)
Strand=Plus/Plus
Query 83 GCGTCTCCCAC-CAACAAGACGAGCTACACAGCTTCCGAAAATACCTAAGATGGATGTGC 141
|||| || ||| | |||||||||||| ||||| ||||| ||||| || |||||||||||
Sbjct 216 GCGTATCTCACGC-ACAAGACGAGCTCCACAGTTTCCGGAAATATCTCCGATGGATGTGC 274
Query 142 GTAGATCACTCAAGTCCATGGACAGCGATTCTCTCTTGGACCGTGTTCGTCGTCTTCACC 201
|||||||| || ||||| ||||| ||| |||| || ||| | ||||||| || |||||
Sbjct 275 GTAGATCAGTCGAGTCCTTGGACGGCGGTTCTATCATGGTCTATGTTCGTTGTTTTCACG 334
Query 202 CTCGTCGTTCCTGCGATC-TCTCACTTCCTTCTCGCTTGCGCCGATTGCGACAGTTACCA 260
||||| |||||||| | | ||||||||| | ||||||||| | || ||||| || | ||
Sbjct 335 CTCGTTGTTCCTGCCA-CGTCTCACTTCATGCTCGCTTGCTCTGACTGCGATAGCCATCA 393
Query 261 TTCAAGACCTTATGATTCCGTTGTTCAGCTTTCCCTAAGCAGCGTCGCCAC-CGTCTC-T 318
|| || || || |||||||||||||||||||| || ||||| |||| | | | || |
Sbjct 394 CTCTAGGCCGTACGATTCCGTTGTTCAGCTTTCTCTTAGCAGTTTCGCTGCTC-TTTCGT 452
Query 319 TTCCTCTGTCTCACCAGATTCGTTAGCAAATACGGTCTCCGACGATTCCTCTTCTTTGAT 378
|| || |||||| |||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 453 TT-CTTTGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTCCTATTCTTTGAT 511
Query 379 AAACTCTGGGACGAGAGCGAAACTGTTCGACGAAATTATACCAATCAACTCAATACTTCG 438
|| || ||||| |||||||| || ||||| | | || |||||||| ||||||| |||
Sbjct 512 AAGCTTTGGGATGAGAGCGAGACCGTTCGTCTAGGCTACACCAATCAGCTCAATAGATCG 571
Query 439 CTTCATATTGTGTCCTACTTTGTGATC-CCTTGTTTCTCAGCAATGAG-TGCATACAAAA 496
||| | ||| | |||||||| ||| || |||||||||| ||| ||||| | | || || |
Sbjct 572 CTTAAGATTCTCTCCTACTTCGTG-TCTCCTTGTTTCTTAGCGATGAGCT-CTTATAAGA 629
Query 497 TTTGGTGGTACGCATCAGGTGGATCTCGA-ATACCGTTT--TTAGGAAACGTTGTGTTAA 553
| |||||||| || ||||| | |||| | || || ||| || || || ||| | || |
Sbjct 630 TATGGTGGTATGCTTCAGGAGCTTCTC-AGATTCC-TTTCCTT-GGTAATGTTATCTTGA 686
Query 554 GTGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTT-TATCGAACAACCGTAATC 612
|||||||||| |||||| | |||||||| || || ||| || || || || ||||| |||
Sbjct 687 GTGATACAGTTGCTTGTTTGATGGAGCTCTGCTCGTGG-TTGTACCGTACTACCGTGATC 745
Query 613 TTCCTTGTTTGTGTTCTCTTTCGTCTCATTTGCCATCTTCAGATCCTTCGTCTTCAAGAC 672
|| || |||||||| ||||| |||||||| |||||||| ||||| ||| | || ||||||
Sbjct 746 TTTCTGGTTTGTGTCCTCTTCCGTCTCATCTGCCATCTCCAGATTCTTAGGCTGCAAGAC 805
Query 673 TTTGCTAAGCTTTTTCAGATTGATTCAGATGTTGGTTCTATATTGTCTGAACATCTTCGT 732
||||| || |||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 806 TTTGCCCAGGTTTTCCAGATGGATTCAGATGTTGGTTCTATCTTGTCTGAACATCTCCGT 865
Query 733 ATTAGACGTCATCTTAGAATCATCAGCCATAGATATCG-TTCTTTCATTCTATGTT-T-A 789
|| ||||||||||| |||||||||||||| |||| || |||| | | | |||| |
Sbjct 866 ATCAGACGTCATCTGAGAATCATCAGCCACCGATACCGAACCTTT-A-TAT-TGTTGTCC 922
Query 790 TTGATTCTT-GTTACTGGAAGTCAGTTTT-CTTCTCTGCTTATTACTACCAAAGCTTACA 847
|||| | || || |||||||||||||||| | |||||||||||||| || || || |||
Sbjct 923 TTGA-TATTAGTCACTGGAAGTCAGTTTTAC-TCTCTGCTTATTACCACTAAGGCCTACG 980
Query 848 CTGAAGTCAATATGTACAGAGCTGGAGAACTCGCTCTTTGTTCGATGACATTAGTCACTG 907
||||| | ||||| ||||||||||||||||| || || ||||| ||||| | |||||||
Sbjct 981 CTGAATTGAATATCTACAGAGCTGGAGAACTAGCACTATGTTCAATGACGCTGGTCACTG 1040
Query 908 CACTTCTGATACTATTACGAAGTGCATCAAAGATCACACATAAGGCTCAAGCTGTGACAT 967
|||| || || || ||||||||||||||||||||||||| |||||||| || ||||| |
Sbjct 1041 CACTGCTCATTTTACTACGAAGTGCATCAAAGATCACACACAAGGCTCAGGCGGTGACTT 1100
Query 968 GT-TTAGCTGCAAAATGGCATGTATGCGCGACGTTAGAATCCTTTGATCAGACAGTAGAT 1026
|| || || || || ||||||||||| |||||| |||||||||||| |||| || |||
Sbjct 1101 GTCTT-GCAGCCAAGTGGCATGTATGTGCGACGATAGAATCCTTTG---AGACTGTGGAT 1156
Query 1027 GGAGAGACTCCAACTTTGGTTGCTAGAAACAA-C-AACAAC-GATAAC-A-ACAATGGCC 1081
||||||||||||| || |||| ||| | ||| | || || ||| || | ||| |
Sbjct 1157 GGAGAGACTCCAAGGTTAGTTGATAG-AGCAAGCGGAC-ACGGAT-ACTATCCAACAG-- 1211
Query 1082 ATGATGTTATTACGTTGACAGAATCAGACAGCGACGAGTATGGTGATGAAGAAGATGATC 1141
|||||| | || || ||||||||| || || || ||||| || ||||||||||||
Sbjct 1212 ATGATG--A-TA--ATG-GAGAATCAGATAGTGAAGATTATGGAGACGAAGAAGATGATT 1265
Query 1142 TAGACAATAATAA-CATTATTCCTGCTTATGCTT-TCAGTACCATGTCATTCCAAAAACG 1199
| || || || || | | |||||||||||||||| | || ||||| ||||||||||||||
Sbjct 1266 TCGATAACAACAATC-TCATTCCTGCTTATGCTTAT-AGCACCATATCATTCCAAAAACG 1323
Query 1200 GCAAGCTCTAGTGAGTTATTTTGAGAATAACAGAGCAGGAATCACAGTGTATGGGTTTAC 1259
|||||||||||||| ||| |||||||| || ||| |||||||||| |||| |||||||||
Sbjct 1324 GCAAGCTCTAGTGAATTACTTTGAGAACAATAGATCAGGAATCACGGTGTTTGGGTTTAC 1383
Query 1260 ACTTGATAGAGGTACTCTCCATACAATCTTTGG-ACTTGAATTGTCTCTTGTTCTCTGGC 1318
|||||||||| | ||||||||||||||||| || | | ||| |||| ||||||||||||
Sbjct 1384 ACTTGATAGAAGCACTCTCCATACAATCTTCGGTA-TCGAAATGTCGCTTGTTCTCTGG- 1441
Query 1319 TT-CTCGGTAAAACCATTGGAATTTCTTGA 1347
|| || ||||| ||||||||||||||||||
Sbjct 1442 TTACTTGGTAAGACCATTGGAATTTCTTGA 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5