BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914177
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50650.1 | Symbols: | Stigma-specific Stig1 family protein ... 778 0.0
> AT1G50650.1 | Symbols: | Stigma-specific Stig1 family protein
| chr1:18763773-18764297 REVERSE LENGTH=525
Length=525
Score = 778 bits (421), Expect = 0.0
Identities = 493/527 (94%), Gaps = 7/527 (1%)
Strand=Plus/Plus
Query 1 ATGATGACCATTAAGCTGACATTTTGTGCCTTAATCTTCTTCATCTTAAACTCTCTTCTT 60
||||||| ||||||||||||||| |||||||||||||||||| ||||||| || ||||||
Sbjct 1 ATGATGAGCATTAAGCTGACATTGTGTGCCTTAATCTTCTTCCTCTTAAATTCACTTCTT 60
Query 61 CATCAAGTTATCGGTCATAATAACCAACTTAATACAACCTCTTCATGGCTTAAGAGCCAC 120
||||| ||| ||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 CATCATGTTCTCGGTCACGATAACCAACTTAACACAACCTCGTCATGGCTTAAGAGCCAC 120
Query 121 ACCAAAGCAGC-AGCAACAACAAATTGGGGTAGGCCAAAGCCACCGATGTGTAAACCATG 179
| ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ATCAAAGCAGCTA-CAACAACAAATTGGGGTAGACCAAAGCCACCGATGTGTAAACCATG 179
Query 180 GATTTGCAAACGGTCCGGACCGCCA-ATGGGTCGAATGAGATGTTGTCGTAACCAATGCG 238
||||||||||||||||||||| || | || |||||||||||||||||||||||||||||
Sbjct 180 GATTTGCAAACGGTCCGGACCATCAGA-GGCTCGAATGAGATGTTGTCGTAACCAATGCG 238
Query 239 TTGATGTCTTGTCCGATCCAAACCATTGTCGGTTCTGTTTCCGGAGTTGTAGGTTCGCAT 298
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 TTGATGTCTTGTCCGATCCAAACCATTGTCGGTTCTGTTTCAAGAGTTGTAGGTTCGCAT 298
Query 299 TGTCGTGCTGCGATGGAGATTGTGTGGACACGAACAATGATCCGTCTAATTGTGGACAAT 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 TGTCGTGCTGCGATGGAGATTGTGTGGACACGAACACTGATCCGTCTAATTGTGGACAAT 358
Query 359 GCGGGAATGAGTGTGAATCCGGGGCGTCTTGTGAGTTTGGTATGTGTGGTTATGCTGCTC 418
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 359 GCGGGAACGAGTGTGAATCCGGTGCGCCTTGTGAGTTTGGTATGTGTGGTTATGCTGCTC 418
Query 419 CATCGTCACAGCCTGGAAAACGTCATCGTCGGCCCAAGTTTCATCGGCCACATCCTCCAC 478
||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
Sbjct 419 CATCGTCACAGCCTGGAAAACGTCATCGTCGTCACAAGTTTCATCGGCCACGTCCTCCTC 478
Query 479 CTTCTCCGGACAGTAAAC--A-TTATGATGATCATGATGATGAGTAA 522
|||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 479 CTTCTCCGGACAGTAAACTTAATTATGATGATCATGATGATGAATAA 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5