BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914183

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50690.1 | Symbols:  | Cystatin/monellin superfamily protein...   556    5e-158


> AT1G50690.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr1:18779606-18780604 FORWARD LENGTH=877
Length=877

 Score =  556 bits (301),  Expect = 5e-158
 Identities = 447/515 (87%), Gaps = 20/515 (4%)
 Strand=Plus/Plus

Query  1    ATGGATCCGCAGGTGGTGGTCGATAAGAAATCTGAGGAGCCTGATCTGAAGCGTCAGAAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  163  ATGGATCCGCAGGTGGTGGTCGATAAGAAATCTGAGGAGCCTGATCTGAAGCGTCAGAAG  222

Query  61   CTGGACGAGGTCGATGAGAA--AT-GCGAAGAGATGTCGTCGTACAGCGATTCTACGTGT  117
            ||||| ||||  || ||| |  || ||||||||||||| ||||||||||| || ||||||
Sbjct  223  CTGGAGGAGGAGGAGGAGGAGGATTGCGAAGAGATGTCTTCGTACAGCGAGTCGACGTGT  282

Query  118  AGTTTCGATTCGGAAGATGAACGATTGGTCAAAGAAGAACT-C-AACAGAAGCGGGGATT  175
            |||||||||||||||||||||||||||||| |||||||| | | || ||||||||| |||
Sbjct  283  AGTTTCGATTCGGAAGATGAACGATTGGTCGAAGAAGAA-TACCAA-AGAAGCGGGTATT  340

Query  176  ACGACTTTGACACCACGAAGCAAAGACGCTTTGTAATGCGCTATCCTGTTAACTTCGAGG  235
            ||||||||||||||||||| ||||||||| ||||  |  |||||||||||| ||||||||
Sbjct  341  ACGACTTTGACACCACGAAACAAAGACGCCTTGTGTTTTGCTATCCTGTTATCTTCGAGG  400

Query  236  ATAGCGATGTTGTTGATGAACCGGACACCGACGGAGATTTGGTCCACCGATTATCCAAGA  295
            |||| || |||| | || |||| || ||||||||||||||||| ||  ||||||||||||
Sbjct  401  ATAGTGACGTTGCTCATAAACCCGAAACCGACGGAGATTTGGTTCATAGATTATCCAAGA  460

Query  296  TTGCTCTTCAGAAACACAATGA-GTATAA-CTTGACAAATCTTGAA-TTAGTGAGAGCTG  352
            |||||||||||||| ||||||| | |||| || || |||||||||| || ||||||||||
Sbjct  461  TTGCTCTTCAGAAATACAATGATG-ATAAGCTGGA-AAATCTTGAACTT-GTGAGAGCTG  517

Query  353  TCAAGGCTAATCGCCATTATGGCGCGGGATTCATTTTCTACATCACCTTCGAGGCCAAGG  412
            |||||||||||||  | ||||| || ||||||||||||||||||||||||||||||||||
Sbjct  518  TCAAGGCTAATCGGAAATATGGAGCCGGATTCATTTTCTACATCACCTTCGAGGCCAAGG  577

Query  413  ATAATGATTCTCACATT-ATT--AT-ACCTTTTCAAGCTACCGTTCGCTACCTTCCACTG  468
            ||  | ||||||||| | |    || || |||||||||| ||||||||||||||| |  |
Sbjct  578  ATGCTAATTCTCACACTGACCCCATTAC-TTTTCAAGCTGCCGTTCGCTACCTTCGAGGG  636

Query  469  CAG-GTAACCGTCTACCGTGTCAACCCTAAACCAT  502
             |  | ||| |||||||||||| ||||||||||||
Sbjct  637  -ATTGAAACGGTCTACCGTGTCCACCCTAAACCAT  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5