BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914202
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase... 560 5e-159
AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase... 547 4e-155
> AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:10402872-10403511 FORWARD
LENGTH=640
Length=640
Score = 560 bits (303), Expect = 5e-159
Identities = 483/568 (85%), Gaps = 20/568 (4%)
Strand=Plus/Plus
Query 1 ATGGTTGCATACGTCGCTAAAAACTTTTCATCGGCTTGTTTAGTGGTTTTAC-TCTTTTT 59
||||| |||||||||| |||||||||||||| ||||||||| ||||||||| || ||||
Sbjct 15 ATGGTGGCATACGTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTC-TTTT 73
Query 60 TGTTGTCTCATCGTATGCAAGGTTTAGTACGATGGTTACAAAAGATGAGATCCACTTCAT 119
||||| |||||||||||||||||||| |||| |||||||||||||| |||||||| |||
Sbjct 74 TGTTGACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 133
Query 120 ATGCACCCAACAAGATATCAATTCTTCATTATGTTTT-GAGATTCTAAA-ACCAAACCCT 177
||||||| ||||||| |||||||||||||| |||||| || ||||||| | |||| |||
Sbjct 134 ATGCACCAAACAAGAGATCAATTCTTCATTTTGTTTTCAAG-TTCTAAATA-CAAATCCT 191
Query 178 GAAATTACTAGATTAGATTTTTCTGGTCTCTTCAAATTTTTGCTCAATTATCAGGCTCGA 237
|||||| ||| |||||||||| || |||||||||||||| |||| ||||||||||||| |
Sbjct 192 GAAATTGCTAAATTAGATTTTCCTAGTCTCTTCAAATTTGTGCTTAATTATCAGGCTCAA 251
Query 238 AATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCGGGATATTGAG 297
||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 252 AATATTTCGGATACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGAA 311
Query 298 TCTAAATATT-CTGTATGCATAGAAGTATATGAAGATGCTCTAGCCAATCGTGATAA-AG 355
||| ||||| || ||||||||||| |||||| | ||||| | | |||||||||| |
Sbjct 312 TCTCAATATAGCT-TATGCATAGAATTATATGGATATGCTTTCGATAATCGTGATATTA- 369
Query 356 CCCTCAAATATTTGGCTGCCAAAGACTATGCCAGCGTAAACTCTATGGTCAGTGCAACAA 415
|||||| |||||| ||||||||||||||| |||||||||| ||| |||||||| |||
Sbjct 370 CCCTCAGATATTTAGCTGCCAAAGACTATAACAGCGTAAACACTAGGGTCAGTGGAACGT 429
Query 416 TGACAA-ATATGTCTACGTGTACCGATGATTTGTCAACAATGAAACCAATACCAAAATTA 474
|| || |||| | ||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 430 TGG-AAGATATATTTACGTGTACTGATGATTTGTCAACAATGAAGCCAATACCACAATTT 488
Query 475 TTTATAACGAAAAGTAATGTT-ATTGCAGA-TCTGTCTAACATTATATTTGTGATTCTCG 532
||||| ||| |||||||| || ||| ||| | ||||||| ||| | || ||||||||||
Sbjct 489 TTTATGACGGAAAGTAAT-TTGATTAAAGAAT-TGTCTAAGATTCTCTTAGTGATTCTCG 546
Query 533 AACATTGCATAAG-aa-a-aaaa-aaTT 556
|| || |||||| || | |||| ||||
Sbjct 547 AATGTTTCATAAGTAAGAGAAAAGAATT 574
> AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:1877872-1878545 FORWARD
LENGTH=674
Length=674
Score = 547 bits (296), Expect = 4e-155
Identities = 479/565 (85%), Gaps = 21/565 (4%)
Strand=Plus/Plus
Query 1 ATGGTTGCATACGTCGCTAAAAACTTTTCATCGGCTTGTTTAGTGGTTTTAC-TCTTTTT 59
|||||||| ||||||| |||||||||||||| ||||||||| ||||||||| || ||||
Sbjct 17 ATGGTTGCTTACGTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTC-TTTT 75
Query 60 TGTTGTCTCATCGTATGCAAGGTTTAGTACGATGGTTACAAAAGATGAGATCCACTTCAT 119
||||| |||||||||||||||||||| |||| |||||||||||||| |||||||| |||
Sbjct 76 TGTTGACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 135
Query 120 ATGCACCCAACAAGATATCAATTCTTCATTA-TGTTTT-GAGATTCTAAAAC-CAAACCC 176
||||||| |||||||||||||||||||| || |||||| || |||| |||| |||| ||
Sbjct 136 ATGCACCAAACAAGATATCAATTCTTCA-TATTGTTTTCAAG-TTCT-AAACGCAAATCC 192
Query 177 TGAAATTACTAGATTAGATTTTTCTGGTCTCTTCAAATTTTTGCTCAATTATCAGGCTCG 236
||||||| |||||||||||||| || |||||||||||||| |||| |||||||||||||
Sbjct 193 TGAAATTGCTAGATTAGATTTTCCTAGTCTCTTCAAATTTGTGCTTAATTATCAGGCTCA 252
Query 237 AAATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTACACGC-GGGATATTG 295
||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 253 AAATATTTCAGATAAGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCCGGG-TGTTG 311
Query 296 AGTCTAAATATT-CTGTATGCATAGAAGTATATGAAGATGCTCTAG-CCAATCGTGATAA 353
| ||||||||| || |||| |||||| | |||||| || || | | || |||||| |
Sbjct 312 AATCTAAATATAACT-TATGTATAGAATTTTATGAAAATTCTTTCGACCGG-CGTGATGA 369
Query 354 AGCCCTCAAATATTTGGCTGCCAAAGACTATGCCAGCGTAAACTCTATGGTCAGTGCAAC 413
|||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||| |||
Sbjct 370 AGCCCTCAGATATTTGGCTGCCAAAGACTATGGCAGCGTAAACACTATGGTCGGTGGAAC 429
Query 414 AATGACAAATATGT-CTACGTGTACCGATGATTTGTCAACAATGAAACCAATACCAAAAT 472
|| |||||||| | || ||| | |||||||||||||||||||| ||| ||||| |||
Sbjct 430 GGCGATAAATATGTTCAAC-TGTGCTGATGATTTGTCAACAATGAAGCCAGTACCACAAT 488
Query 473 TATTTATAACGAAAAGTAATGTT-ATTGCAGA-TCTGTCTAACATTATATTTGTGATTCT 530
| ||| | ||| |||||||| || ||| ||| | ||||||| ||| | || ||||||||
Sbjct 489 TTTTTGTGACGGAAAGTAAT-TTGATTAAAGAAT-TGTCTAAGATTCTCTTAGTGATTCT 546
Query 531 CGAACATTGCATAAGaaa-aaaaaa 554
||| || |||||| || ||||||
Sbjct 547 AGAATGTTTCATAAGTAAGAAAAAA 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5