BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914215
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50960.1 | Symbols: ATGA2OX7, GA2OX7 | gibberellin 2-oxidase... 1507 0.0
> AT1G50960.1 | Symbols: ATGA2OX7, GA2OX7 | gibberellin 2-oxidase
7 | chr1:18889549-18891719 FORWARD LENGTH=1011
Length=1011
Score = 1507 bits (816), Expect = 0.0
Identities = 948/1013 (94%), Gaps = 4/1013 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCAACCTCCCTTTAAGACAAATTTCTGCTCGATTTTCGGAAGCTCCTTTCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCTTCTCAACCTCCCTTTAAGACAAATTTCTGCTCGATTTTCGGAAGCTCATTTCCA 60
Query 61 AA-ACAAATTAGTGATAGCAACACAAACACATCAACTATCCAAACCGGAGGCTTAAAGCT 119
|| | || |||||| ||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 61 AATTC-AACTAGTGAGAGCAATACAAACACATCAACTATCCAAACCTCAGGCATAAAGCT 119
Query 120 TCCTGTGATTGATCTCAGCCATCTAACTAGTGGCGAGGAGGTCAAACGCAAAAGATGTGT 179
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TCCTGTGATCGATCTCAGCCATCTAACTAGTGGTGAGGAGGTCAAACGCAAAAGATGTGT 179
Query 180 GAAACAAATGGTTGCAGCTGCGAAAGAGTGGGGATTTTTTCAAATTGTGAACCATGGAAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAAACAAATGGTTGCAGCTGCGAAAGAGTGGGGATTTTTTCAAATTGTGAACCATGGAAT 239
Query 240 TTCTAAAGACGTCTTTGAGATGATGTTTCTCGAAGAGAAGAAACTCTTTGACCTACCCTT 299
| | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||
Sbjct 240 TCCCAAAGACGTCTTTGAGATGATGCTCCTCGAAGAGAAGAAACTCTTTGACCAACCTTT 299
Query 300 TTCTGCGAAAGTCCGAGAAACGTTCT-CGGACTTATCGAAGAATAGTTACAGGTGGGGAA 358
||||| ||||||| ||||| |||| | ||||||||||||||||||||||| | |||||||
Sbjct 300 TTCTGTGAAAGTCAGAGAA-CGTTTTTCGGACTTATCGAAGAATAGTTACCGTTGGGGAA 358
Query 359 ACCCTAACGCCACTTCCCCCGCTCAATACTCCGTTTCGGAAGCGTTTCACATCACTCTTT 418
|||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 359 ACCCTAGCGCCACTTCTCCCGCTCAGTACTCCGTTTCGGAAGCGTTTCACATCATTCTTT 418
Query 419 CAGAGATTTCAAAGTTTTCTGATGATCGCAACAACCTGAGAACAACCGTTGAAACGTATG 478
||||| |||||| | |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 419 CAGAGGTTTCAAGGATTTCTGATGATCGCAACAACCTCAGAACAATCGTTGAAACGTATG 478
Query 479 TGCAAGAGATAACTCGAGTGGCACAAATGATATGTGAAGTACTCGGGAAACAAGTGAACG 538
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 479 TGCAAGAGATAGCTCGAGTGGCACAAATGATATGTGAAATACTGGGGAAACAAGTGAACG 538
Query 539 TGAACTCGGAGTATTTCGAAAACATTTTTGAGCTTAAAAACAGTTTTTTAAGGCTCAATA 598
||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 539 TGAGTTCGGAGTATTTCGAAAACATTTTTGAGCTTGAAAACAGTTTTCTAAGGCTCAATA 598
Query 599 AGTACCATCCTCGTGTTTTTGGTTCTGAAGTGTTTGGTTTGGTTCCTCATACCGATACAA 658
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTACCATCCTAGTGTTTTTGGTTCTGAAGTGTTTGGTTTGGTTCCTCATACCGATACAA 658
Query 659 GCTTCCTCACTATACTCTCTCAAGATCAAATCGGAGGATTAGAACTGaaaaaaaaTGGAG 718
| || |||||||||||||||||||||||||||||||| |||||| || |||| ||||||
Sbjct 659 GTTTTCTCACTATACTCTCTCAAGATCAAATCGGAGGGTTAGAATTGGAAAATAATGGAC 718
Query 719 AATGGATCAACGTAAAACCTTGCTCGGAAGCCCTTACAGTCAATATTGGGGATATGTTTC 778
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 719 AATGGATCAGCGTAAAACCTTGCTTGGAAGCCCTTACAGTCAACATTGGGGATATGTTTC 778
Query 779 AGGCATTGAGTAATGGAGTGTACGAGAGCGTGAGACATAGAGTGATTTCTCCGGCAAATA 838
||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 779 AGGCACTGAGTAATGGAGTGTACCAAAGCGTGAGACATAGAGTGATTTCTCCAGCAAATA 838
Query 839 TCGAGAGAATGTCGATAGCCTTCTTCGTATGTCCTTATCTCGAAACCGAGATCGAATGCT 898
||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 839 TCGAGAGGATGTCAATAGCTTTCTTCGTATGTCCTTATCTCGAAACTGAGATCGATTGCT 898
Query 899 TCGGGTATCCAAAGAAGTATAAAAGATTCAGTTTCAAAGAGTACAAAGAGCAGAGTGAAC 958
| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 899 TTGGGTATCCAAAGAAGTATAGAAGATTCAGTTTCAGAGAGTACAAAGAGCAGAGTGAAC 958
Query 959 GTGATGTTAAAGAAACTGGTGATAAGGTAGGCTTGTCCAGGTTTCTCATTTGA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGATGTTAAAGAAACTGGTGATAAGGTAGGCTTGTCCAGGTTTCTCATTTGA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5