BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914216 Length=1119 Score E Sequences producing significant alignments: (Bits) Value AT1G09650.1 | Symbols: | F-box and associated interaction doma... 388 5e-107 AT4G19452.1 | Symbols: | pseudogene of F-box family protein | ... 211 1e-53 > AT1G09650.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:3125807-3127284 FORWARD LENGTH=1478 Length=1478 Score = 388 bits (210), Expect = 5e-107 Identities = 380/460 (83%), Gaps = 19/460 (4%) Strand=Plus/Plus Query 384 GCTTGCATTCGGTAAAGACACTTTCTCCGGCACTTTCAAGCCCGTCTGGCTATACAACTC 443 ||||| |||||||||||||| || | ||||| | ||||||||| ||| |||||||||| Sbjct 669 GCTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTC 728 Query 444 T-TCAGAGATTAGCATCCAAAACGCTACTACATGCGAAGTTTTCGACTTTTCCACCAATG 502 | | ||| ||| || | ||||||||||||||||||| |||||||||||| |||||| | Sbjct 729 TAT-AGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACG 787 Query 503 CTTGGAGGTATGTCACTCCCTCTGCTCCTTATCGTG-TCCTTGGTCT-CCCTG-ATCCTG 559 ||||||||||||| | || ||||||||||| | | | ||||| | ||| | | |||| Sbjct 788 CTTGGAGGTATGTTTCACCAGCTGCTCCTTATAG-GATTGTTGGT-TGCCCCGCA-CCTG 844 Query 560 TCTTTC-TAGATGGCTCCCTTCATTGGTTCACCGACTGCCAAGAAACCAAAATTCTATCC 618 || | | ||||||| || ||||||||||||||||| ||| | |||||||||||||| || Sbjct 845 TC-TGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAATTCTTTCG 903 Query 619 ATGGATCTTCACACCGAAGCCTTTCAAGTCATCTCTAAAGCTCCCTTTGCCGACCATGTT 678 | ||||||||||||||| |||||||||| |||||||||||||||||||| | |||| Sbjct 904 TTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCC-A--ATGTA 960 Query 679 GTTAGGCCTTACGATATCGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG 738 | | || || |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GAT-GG-ATT-CGATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG 1017 Query 739 AAG-TGGCCCAACCAACTCATTTGGTCTTTCAATTCACC-AACAAGACATGGGACAAATT 796 ||| || ||||||||| | || ||||| ||||||||| |||||||||||| ||||| | Sbjct 1018 AAGCTG-CCCAACCAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAAAT 1076 Query 797 CTGTTCCATTGATCTTCATCTCACTTCTCATGGGTTTGGT 836 ||||||||| |||| || | ||||||| | |||||||| Sbjct 1077 GTGTTCCATTAATCTGGATATAACTTCTCGTTGGTTTGGT 1116 > AT4G19452.1 | Symbols: | pseudogene of F-box family protein | chr4:10609555-10610200 REVERSE LENGTH=579 Length=579 Score = 211 bits (114), Expect = 1e-53 Identities = 217/265 (82%), Gaps = 14/265 (5%) Strand=Plus/Plus Query 354 TTACTTCAAGCTTAAACACCCACA-T-TTTAAGCTTGCATTCGGTAAAGACACTTTCTCC 411 ||||| ||||||| || || || | | |||| ||||| |||||||||||||| ||| Sbjct 267 TTACTACAAGCTT-AA-ACGCAAATTCTTTATGCTTGGATTCGGTAAAGACAAATTCAGG 324 Query 412 GGCACTTTCAAGCCCGTCTGGCTATACAACTCTTCAGAGATTA-GCATCCAAAACGCTAC 470 ||||| | ||||||||| ||| ||||||||||| |||| | || || | |||||||||| Sbjct 325 GGCACATACAAGCCCGTTTGGTTATACAACTCTGCAGA-AATAGGCCTAAAAAACGCTAC 383 Query 471 TACATGCGAAGTTTTCGACTTTTCCACCAATGCTTGGAGGTATGTCACTCCCTCTGCTCC 530 |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| Sbjct 384 TACATGCGAAGTTTTCGACTTTAGTACCAATGCTTGGAGGTATGTCACTCTCGCTGCTCC 443 Query 531 TTATCGTGTCCTTGGT-CT--CCCTG-ATCCTGTCTTTCTAGATGGCTCCCTTCATTGGT 586 |||||| | ||| | || ||| | | ||||| | ||||||||| || ||| |||||| Sbjct 444 TTATCG-GA--TTGCTGCTTACCCCGCA-CCTGTGTATCTAGATGGGTCGCTTTATTGGT 499 Query 587 TCACCGACTGCCAAGAAACCAAAAT 611 ||||||| ||| ||||||||||||| Sbjct 500 TCACCGAGTGCAAAGAAACCAAAAT 524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54869195685 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5