BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914216
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09650.1 | Symbols: | F-box and associated interaction doma... 388 5e-107
AT4G19452.1 | Symbols: | pseudogene of F-box family protein | ... 211 1e-53
> AT1G09650.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:3125807-3127284 FORWARD LENGTH=1478
Length=1478
Score = 388 bits (210), Expect = 5e-107
Identities = 380/460 (83%), Gaps = 19/460 (4%)
Strand=Plus/Plus
Query 384 GCTTGCATTCGGTAAAGACACTTTCTCCGGCACTTTCAAGCCCGTCTGGCTATACAACTC 443
||||| |||||||||||||| || | ||||| | ||||||||| ||| ||||||||||
Sbjct 669 GCTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTC 728
Query 444 T-TCAGAGATTAGCATCCAAAACGCTACTACATGCGAAGTTTTCGACTTTTCCACCAATG 502
| | ||| ||| || | ||||||||||||||||||| |||||||||||| |||||| |
Sbjct 729 TAT-AGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACG 787
Query 503 CTTGGAGGTATGTCACTCCCTCTGCTCCTTATCGTG-TCCTTGGTCT-CCCTG-ATCCTG 559
||||||||||||| | || ||||||||||| | | | ||||| | ||| | | ||||
Sbjct 788 CTTGGAGGTATGTTTCACCAGCTGCTCCTTATAG-GATTGTTGGT-TGCCCCGCA-CCTG 844
Query 560 TCTTTC-TAGATGGCTCCCTTCATTGGTTCACCGACTGCCAAGAAACCAAAATTCTATCC 618
|| | | ||||||| || ||||||||||||||||| ||| | |||||||||||||| ||
Sbjct 845 TC-TGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAATTCTTTCG 903
Query 619 ATGGATCTTCACACCGAAGCCTTTCAAGTCATCTCTAAAGCTCCCTTTGCCGACCATGTT 678
| ||||||||||||||| |||||||||| |||||||||||||||||||| | ||||
Sbjct 904 TTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCC-A--ATGTA 960
Query 679 GTTAGGCCTTACGATATCGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG 738
| | || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAT-GG-ATT-CGATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG 1017
Query 739 AAG-TGGCCCAACCAACTCATTTGGTCTTTCAATTCACC-AACAAGACATGGGACAAATT 796
||| || ||||||||| | || ||||| ||||||||| |||||||||||| ||||| |
Sbjct 1018 AAGCTG-CCCAACCAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAAAT 1076
Query 797 CTGTTCCATTGATCTTCATCTCACTTCTCATGGGTTTGGT 836
||||||||| |||| || | ||||||| | ||||||||
Sbjct 1077 GTGTTCCATTAATCTGGATATAACTTCTCGTTGGTTTGGT 1116
> AT4G19452.1 | Symbols: | pseudogene of F-box family protein
| chr4:10609555-10610200 REVERSE LENGTH=579
Length=579
Score = 211 bits (114), Expect = 1e-53
Identities = 217/265 (82%), Gaps = 14/265 (5%)
Strand=Plus/Plus
Query 354 TTACTTCAAGCTTAAACACCCACA-T-TTTAAGCTTGCATTCGGTAAAGACACTTTCTCC 411
||||| ||||||| || || || | | |||| ||||| |||||||||||||| |||
Sbjct 267 TTACTACAAGCTT-AA-ACGCAAATTCTTTATGCTTGGATTCGGTAAAGACAAATTCAGG 324
Query 412 GGCACTTTCAAGCCCGTCTGGCTATACAACTCTTCAGAGATTA-GCATCCAAAACGCTAC 470
||||| | ||||||||| ||| ||||||||||| |||| | || || | ||||||||||
Sbjct 325 GGCACATACAAGCCCGTTTGGTTATACAACTCTGCAGA-AATAGGCCTAAAAAACGCTAC 383
Query 471 TACATGCGAAGTTTTCGACTTTTCCACCAATGCTTGGAGGTATGTCACTCCCTCTGCTCC 530
|||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 384 TACATGCGAAGTTTTCGACTTTAGTACCAATGCTTGGAGGTATGTCACTCTCGCTGCTCC 443
Query 531 TTATCGTGTCCTTGGT-CT--CCCTG-ATCCTGTCTTTCTAGATGGCTCCCTTCATTGGT 586
|||||| | ||| | || ||| | | ||||| | ||||||||| || ||| ||||||
Sbjct 444 TTATCG-GA--TTGCTGCTTACCCCGCA-CCTGTGTATCTAGATGGGTCGCTTTATTGGT 499
Query 587 TCACCGACTGCCAAGAAACCAAAAT 611
||||||| ||| |||||||||||||
Sbjct 500 TCACCGAGTGCAAAGAAACCAAAAT 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5