BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914229
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51055.1 | Symbols: | FBD-like domain family protein | chr1... 592 2e-168
AT1G50980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 326 3e-88
> AT1G51055.1 | Symbols: | FBD-like domain family protein | chr1:18925286-18926315
REVERSE LENGTH=486
Length=486
Score = 592 bits (320), Expect = 2e-168
Identities = 390/424 (92%), Gaps = 4/424 (1%)
Strand=Plus/Plus
Query 362 AGACTCCGGATTCGTATCTTCCTACTGGGACTTCCTTCGTATTTCTTGACCATCTAGAGC 421
||| ||||||| |||||| |||||||||||||||||| || | |||||||||||| ||||
Sbjct 65 AGAATCCGGATCCGTATCCTCCTACTGGGACTTCCTTAGTCTATCTTGACCATCTGGAGC 124
Query 422 TATGTTTATGTTCTACGGAGTGGTGGAACTTACTGACCTGTATACTCGTTGATGCTCCGA 481
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 125 TATGTTTATGTTCTACGGAGTGGTGGAACTTACTTACCTGTATACTCGATGATGCTCCAA 184
Query 482 AACTTCGAGTTCTCAAGCTCAAATTGTATCGAAAACATTGTGTCCG-GTACAACGATGT- 539
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 185 AACTTCGAGTTCTCAAGCTCAAATTGTATCGAAAACATTGTGTC-GAGTACAACGA-GTC 242
Query 540 GATGGATCAATGGAACCAACCAGACTATGTTCCCATGTGTTTATCATCATATCTTGAGAT 599
|||||| | |||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 243 GATGGAACCATGGAAGCAACCAGATTATGTTCCCATATGTTTATCATCATATCTTGAGAT 302
Query 600 CTTTGAGTGGAGGCAATACAACGGTAAAGAGAAAGAGAGAGAAGTTGCAAAGTACATTCT 659
|||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 303 ATTTGAGTGGAGGCAATACAATGGTGAAGAGCAAGAGAGAGAAGTTGCAAAGTACATTCT 362
Query 660 AGCAAACGCGAGTCGTCTAAAGAAGGCGACATTCTACTCAGAATCTGGAGAGAAGGATGG 719
|| |||||||||||||||||||||||||| |||||||| |||||||| ||| ||| ||||
Sbjct 363 AGAAAACGCGAGTCGTCTAAAGAAGGCGATATTCTACTTAGAATCTGCAGAAAAGCATGG 422
Query 720 GATATTGAAAGAGTTAGAATATATGGCCAGAGGTTCAACGACATGCAAGCTTGTGTTTGA 779
||||||||| |||||||||| ||||||||||||||||| || |||| |||||||||||||
Sbjct 423 GATATTGAAGGAGTTAGAATGTATGGCCAGAGGTTCAAAGAAATGCCAGCTTGTGTTTGA 482
Query 780 TTAA 783
||||
Sbjct 483 TTAA 486
> AT1G50980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:18900541-18902057 REVERSE LENGTH=1113
Length=1113
Score = 326 bits (176), Expect = 3e-88
Identities = 326/395 (83%), Gaps = 24/395 (6%)
Strand=Plus/Plus
Query 393 TTCCTTCGTATTTCTTGACCATCTAGAGCTATGTTTATGTTCTACGGAGTGGTGGAA-CT 451
||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 726 TTCCTTCATCTTTCTTGACCATCTAGAGCTATGTTTATGTTCTGCGGAGCAGTGGAATCT 785
Query 452 TACTGACCTGTATACTCGT-TGATGCTCCGAAACTTCGAGTTCTCAAGCTCAAATTGTAT 510
||| ||| |||||||| | ||||||||| ||||||||||||| |||||||| |||||
Sbjct 786 -ACTTACCCGTATACTCAACT-ATGCTCCGAGACTTCGAGTTCTCCAGCTCAAACTGTAT 843
Query 511 CGAAAA-CATTGTGTCC-GGT-AC-AACGATGTGATGGATCAATGGAACCAACCAGACTA 566
| | || || |||||| || || || || |||||| ||||||||||||| |
Sbjct 844 C-ATAAGCACTGTGTCAAGGACACTAAAAATCTGATGG------GGAACCAACCAGATT- 895
Query 567 TG-TTCCCATGTGTTTATCATCAT-ATCTTGAGATCTTTGAGTGGAGGCAATACAACGGT 624
|| |||| | |||||||||| | |||| |||||||| || ||||| ||||||||||
Sbjct 896 TGATTCCTAAAAGTTTATCATC-TCATCTGGAGATCTTGGAATGGAGACAATACAACGAC 954
Query 625 AAAGAGAAAGAGAGAGAAGTTGCAAAGTACATTCTAGCAAACGCGAGTCGTCTAAAGAA- 683
| || | |||||||||||| |||||||||||| ||||||||||||||| |||||| |||
Sbjct 955 ACAGCGCAAGAGAGAGAAGCTGCAAAGTACATCCTAGCAAACGCGAGTGGTCTAA-GAAA 1013
Query 684 GGCGACATTCTACTCAGAATCTGGAGAGAAGGATGGGATATTGAAAGA-GTTAGAATATA 742
||||||||||||| |||||||| ||||||| ||||||| |||||||| |||||||| |
Sbjct 1014 GGCGACATTCTACACAGAATCTACAGAGAAGCATGGGATGTTGAAAGAAGTTAGAATGTG 1073
Query 743 TGGCCAGAGGTTCAACGACATG-CAAGCTTGTGTT 776
||||||||||||||| ||||| || |||||||||
Sbjct 1074 TGGCCAGAGGTTCAAAAACATGTCA-GCTTGTGTT 1107
Score = 274 bits (148), Expect = 9e-73
Identities = 215/246 (87%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 2 TGCAGCTCAAGCTGAATCCTCAT-TG-TAC-ACATAGAGACATCAAACCTTTGATTAACA 58
||||||||||| | ||| | ||| || ||| | ||| ||||||| || | ||| |||| |
Sbjct 245 TGCAGCTCAAGATTAAT-C-CATCTGCTACGA-ATAAAGACATCCAATCATTGGTTAATA 301
Query 59 TTGCAGTTGCTCGATCCT-TGAGAGAGCTGAGAATTGAGATGATTTGTGAGTCCTTCGAG 117
| ||||||||||| | || ||||||||||||||||||||||||||||| || |||||||
Sbjct 302 TGGCAGTTGCTCGCT-CTATGAGAGAGCTGAGAATTGAGATGATTTGTAAGAACTTCGAG 360
Query 118 TTGCCCAAAAGCTTTTACATGTTTTCACAACTTGAAACTGTTATACTTGAGAAAGTAAGT 177
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 361 TTGCCCAAAAGCTTTTACATGTTTTCACAACTTGAAACTGTTATACTCGACAAAGTAAGT 420
Query 178 TTGGA-GGATGTTCCACGTAATGCTCATTTTCCTTGCCTCAAACGTCTCCACCTTTTATC 236
||| | |||| ||||| | ||| |||||| |||||||||||||||||||||||||||||
Sbjct 421 TTG-ATGGATCCTCCACCTGATGTTCATTTGCCTTGCCTCAAACGTCTCCACCTTTTATC 479
Query 237 GGTCAA 242
||||||
Sbjct 480 GGTCAA 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5