BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914263
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51320.1 | Symbols: | F-box and associated interaction doma... 1153 0.0
AT1G51290.1 | Symbols: | F-box and associated interaction doma... 815 0.0
> AT1G51320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:19025642-19026769 FORWARD LENGTH=1128
Length=1128
Score = 1153 bits (624), Expect = 0.0
Identities = 721/766 (94%), Gaps = 14/766 (2%)
Strand=Plus/Plus
Query 25 AGATTATTGGCATCCAAAAATCGTTATCCAATCACATATGACATAGGTTATGATAACAAA 84
||||| || |||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 370 AGATTTTTCCCATCCATACATCGTTATCCAGTCACATATGACATAGGTTATGATAACAAA 429
Query 85 AAACAATACAAGATG-TTGAATTATTATAAATATGAAGGTGACCCATCAACAAAATCCAG 143
||||||||||||||| | | |||||||||||| |||||||||| |||||| ||||||||
Sbjct 430 AAACAATACAAGATGCTCG-ATTATTATAAATGTGAAGGTGACTCATCAATAAAATCCAT 488
Query 144 GATTTATGAGATTGGGTTATATGCAAAGAAA-TTCAAAGAATTTGG-GTGTGATAGTACT 201
||||||||||||||||||||| |||||||| || |||| |||||| || ||||||||||
Sbjct 489 AATTTATGAGATTGGGTTATATTCAAAGAAAGTT-AAAG-ATTTGGAGTCTGATAGTACT 546
Query 202 TGGTCAATTTTCCAATCAAATTGCGTATCTCTGAATGGAACTTTGTATTGGGCTGGTGTA 261
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGGTCAATTTTCCAATCAAATAGCGTATCTCTGAATGGAACTTTGTATTGGGCTGGTGTA 606
Query 262 GATTTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAAAGACAAACG-AC 320
||| ||||||||||||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 607 GATGTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAAAAACCAA-GAAC 665
Query 321 TTTTTGTCGTCTACCGTTTAAGTACGATGACGACAATGTTCTAGCCCTTGCGGTTTTTAG 380
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 666 TTTTTGTAGTCTACCGTTTATGTACGATGACGACAATGTTCTAGCCCTTGCGGTTTTTAG 725
Query 381 GAAAGATCATCTTTCATTGTTAAACTTATGCAATAAAACATCA-ACGATAAAGATTTGGT 439
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 726 GAAAGATCGTCTTTCATTGTTAAACTTATGCAATAAAACATCAGA-GATAAAGATTTGGT 784
Query 440 TGACAAAGAATAAAATCAATAATAGGGAGGTAGGATTAGAAGAGGACGTGGTGTGGATAA 499
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 785 TGACAAAGAATAATATCAATGATAGGGAGGTAGGATTAGAAGAGGACGTGGTGTGGATAA 844
Query 500 AACTCATGACAGTGTTAATACCTAATTTCCCTAAATTTTCATTTTATTGGTATAACCGTC 559
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 ACCTCATGACAGTGTTAATACCTAATTTCCCTAAATTTTCATTTTATTGGTATAACCGTC 904
Query 560 CTGACCTAACTTACTTCCTCGACAACGATGATGCTAAGAGGCTTGTCATTTGTTGTTATG 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CTGACCTAACTTACTTCCTCGACAACGATGATGCTAAGAGGCTTGTCATTTGTTGTTATG 964
Query 620 ATGAAACTAATCAGGCTTACATCTACATTGTAAAAGGAGATACGTTCGAA-AAAATCAAA 678
|||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 965 ATGAAACTGATCAGGCTTACATCTACATTGTAAAAGGAGATATGTTC-AAGAAAATCAAA 1023
Query 679 ATAGATCAGTATGAGGTTCTATCTGATCAATCTCACCCGCATCT-CCATACATATATCCC 737
||||||||||||||||||||||||||| | |||| |||||| || |||||| ||||||||
Sbjct 1024 ATAGATCAGTATGAGGTTCTATCTGATTATTCTCGCCCGCA-CTTCCATACTTATATCCC 1082
Query 738 CAGTTTGGTTCGGCCTTCCCCGGTCAAAGAGGACAACAAGAATTAA 783
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1083 CAGTTTGGTTCGGCCTTCCCGGGTCAAAGAGGACAACAAGAATTAA 1128
> AT1G51290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:19012173-19013306 FORWARD LENGTH=1134
Length=1134
Score = 815 bits (441), Expect = 0.0
Identities = 659/760 (87%), Gaps = 31/760 (4%)
Strand=Plus/Plus
Query 25 AGATTATTGGCATCCAAAAATCGTTATCCAATC-ACATATGACATAGGTTATGATAACAA 83
|||||||| |||||||| ||| |||||||| | | ||||| ||||||||||||||| ||
Sbjct 373 AGATTATTCGCATCCAATCATCATTATCCAA-CGAAATATGTCATAGGTTATGATAATAA 431
Query 84 AAAACAATACAAGATGTTGAATTATTATAAATATGAAGGTGACCCATCAACAAAATCCAG 143
|||| ||||||| | || | | || |||||| ||| |||||| |||||| |
Sbjct 432 GAAACGATACAAG--G-TG--CT-TGAT---TATGAATTTGAACCATCATCAAAATTGAC 482
Query 144 GATTTATGAGATTGGGTTATATGCAAAGAAA-TTCAAAGAATTTGG-GTGTGATAGTACT 201
|||||||||||||||||||||| |||||||| || |||| |||||| || ||||||| ||
Sbjct 483 GATTTATGAGATTGGGTTATATTCAAAGAAAGTT-AAAG-ATTTGGAGTCTGATAGTTCT 540
Query 202 TGGTCAATTTTCCAATCAAATTGCGTATCTCTGAATGGAACTTTGTATTGGGCTGGTGTA 261
|||||| || ||||||| ||| | |||||||||||||||||||| |||||||||||||||
Sbjct 541 TGGTCAGTTGTCCAATCCAATAGTGTATCTCTGAATGGAACTTTATATTGGGCTGGTGTA 600
Query 262 GATTTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAAAGACAAACGACT 321
||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 601 GATGTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAGAGACTAACAACT 660
Query 322 TTTTGTCGTCTACCGTTT-AAGTACGATGACGACAATGTTCTAGCCCTTGCGGTTTTTAG 380
|||||||| ||||| ||| |||||| |||| |||||| ||||||||||||||||||||||
Sbjct 661 TTTTGTCGCCTACC-TTTGAAGTACAATGAAGACAATATTCTAGCCCTTGCGGTTTTTAG 719
Query 381 GAAAGATCA-TCTTTCATTGTTAAA-CTTATGCAATAAAACATCAACGATAAAGATTTGG 438
|||||||| | |||| |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 720 GAAAGATCGGT-TTTCGTTGTTAAAACT-ATGCAATAAAACATCAAAGATAAAGATTTGG 777
Query 439 TTGACAAAGAATAAAATCAATAATAGGGAGGTAGGATTAGAAGAGGACGTGGTGTGGATA 498
||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 778 TTGACAAAGAATAGTATAAATAATAGGGAGATAGGATTAGTAGAGGACGTGGTGTGGATA 837
Query 499 AAACTCATGACAGTGTTAATACCTAATTTCCCTAAATTTTCATTTTATTGGTATAACCGT 558
|||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||
Sbjct 838 AAACTCATGACAGTGTTAATACCTGATTTCCCTAAATTGCCATTTCGTTGGTATAATCGT 897
Query 559 CCTGACCTAACTTACTTCCTCGACAACGATGATGCTAAGAGGCTTGTCATTTGTTGTTAT 618
|||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||
Sbjct 898 CCTGACCTAACTTACTTCCTTGACAACGATGATGCTAAGAGGCTCGTTATCTGTTGTTAT 957
Query 619 GATGAAACT-AATCAGGCTTACATCTACATTGTAA-AAGGAGATAC-GTTCGAAAAAATC 675
||||||||| || || | |||||||||||| |||| ||| | ||| || ||||||||
Sbjct 958 GATGAAACTCAA-CAAGTTTACATCTACATCGTAAGAAGAA-ATATTGTAA-AAAAAATC 1014
Query 676 AAAATAGATCAGTATGAGGTTCTATCT-GATCAATCTCAC-CCGCATCTCCATACATATA 733
|||||||||| | ||||| |||| || ||||||||| | || ||||||| ||| ||||
Sbjct 1015 AAAATAGATCTCTTTGAGGATCTA-CTTGATCAATCT-AGTCCTCATCTCCGTACTTATA 1072
Query 734 TCCCCAGTTTGGTTCGGCCTTCCCCGGTCAAAGAGGACAA 773
|||||||||||||||||||| ||| |||||||||||||||
Sbjct 1073 TCCCCAGTTTGGTTCGGCCTACCCAGGTCAAAGAGGACAA 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5