BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914276
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01360.1 | Symbols: RCAR1, PYL9 | regulatory component of AB... 676 0.0
AT1G01340.2 | Symbols: CNGC10 | cyclic nucleotide gated channel... 115 4e-25
> AT1G01360.1 | Symbols: RCAR1, PYL9 | regulatory component of
ABA receptor 1 | chr1:141971-143183 FORWARD LENGTH=1000
Length=1000
Score = 676 bits (366), Expect = 0.0
Identities = 416/439 (95%), Gaps = 7/439 (2%)
Strand=Plus/Plus
Query 88 GTTTGGTCACTTGTACGGAGATTTGACCAGCCGCAGAAATACAAACCATTTGTGAGCAGA 147
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 312 GTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAGAAATACAAACCGTTTGTGAGCAGA 371
Query 148 TGTACAGTAATTGGTGATCCTGAAATCGGTAGTCTTAGAGAAGTCAATGTTAAATCTGGT 207
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 372 TGTACAGTAATCGGTGATCCTGAAATCGGCAGTCTTAGAGAAGTCAATGTTAAATCTGGT 431
Query 208 CTTCCTGCAACAACAAGTACTGAGAGATTAGAACTTCTTGATGATGAAGAACATATCCTC 267
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 432 CTTCCTGCAACAACATCTACTGAGAGATTAGAACTTCTTGATGATGAAGAACACATCCTC 491
Query 268 TGTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTACTCGTCGATTGTT-ACTGT 326
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 492 GGTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTACTCGTCGATT-TTGACGGT 550
Query 327 TCATCCGGAGATAATCGAGGGAAGAGTAGGAACAATGGTGATTGAATCGTTTGTAGTTGA 386
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 551 TCATCCGGAGATAATCGAGGGAAGAGCAGGAACGATGGTGATTGAATCGTTTGTAGTTGA 610
Query 387 TGTTCCTGAAGGTAACACAAAGGATGAGACTTGCTACTTTGTTGAAGCACTTATCAGATG 446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGTTCCTCAAGGTAACACAAAGGATGAGACTTGCTACTTTGTTGAAGCACTTATCAGATG 670
Query 447 TAATCTCAAGTCATTAGCAGATGTTTATGAAAGATTGGCTTCTCAGGAC-TTAACTCAAT 505
||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |||| |
Sbjct 671 TAATCTCAAGTCACTAGCAGATGTTTCTGAAAGATTGGCTTCTCAGGACATTA-CTCAGT 729
Query 506 CG--CTACATTATCAATGA 522
| |||||| ||||||||
Sbjct 730 -GAACTACATAATCAATGA 747
> AT1G01340.2 | Symbols: CNGC10 | cyclic nucleotide gated channel
10 | chr1:132330-135831 REVERSE LENGTH=2397
Length=2397
Score = 115 bits (62), Expect = 4e-25
Identities = 74/80 (93%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 4 GAAACGCGACGCGTAAAGAGCGCCTCCAAGGCTCAAGGACGAAGATGCAGTTGCAGCATT 63
|||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 2187 GAAACGCGACGCGTAAAGAGCGCCTCCAAGGCTCAAGGACGACGACACGGTTGCAGCATT 2128
Query 64 ACGTTCTTTATCTTGACTAG 83
||||||||||||||||||
Sbjct 2127 GTGTTCTTTATCTTGACTAG 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5