BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914306
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 974 0.0
AT1G48180.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 448 5e-125
AT3G43200.1 | Symbols: | pseudogene, hypothetical protein, pre... 316 1e-85
AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 95.3 7e-19
> AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48180.1);
Has 37 Blast hits to 37 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749
FORWARD LENGTH=960
Length=960
Score = 974 bits (527), Expect = 0.0
Identities = 655/715 (92%), Gaps = 15/715 (2%)
Strand=Plus/Plus
Query 1 ATGGCACTCCCTCCATATGATCCGAATTTCACAATT-GCATTCTCAAT-CGGCAGACGCG 58
|||||||||||||| ||||||||||||||||| ||| || || || || ||| |||||||
Sbjct 19 ATGGCACTCCCTCCCTATGATCCGAATTTCAC-ATTGGCTTTTTC-ATACGGTAGACGCG 76
Query 59 A-AA-AT-TTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 115
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 ATAATGTCTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 136
Query 116 CTGAACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGCGTCCACACTGAGTACT 175
||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 137 TTGAGCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCGCACTGAGTACT 196
Query 176 CAGCTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGTAGGCGCAGGCGCAGGGGCAAGC 235
|||||||||||||||||||||||||||| |||||| | | |||||||||| ||||||
Sbjct 197 CAGCTCAGTATTTGGTGGACAAAGCTGG---CTCACGCAACCTCAGGCGCAGGCGCAAGC 253
Query 236 TCACTGTCAAAGACTGCCTTTTCTTTGCGTTAAAGAAAGGCGGAATACCGAAAGCAGAAG 295
|||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 254 TCACTGTCAAGGACTGCCTTAACTTTGCGTTAAAGAAAGGCGGCATACCGAGAGCAGAAG 313
Query 296 ATTGGCCACCTTTGGGATCTGAGTCAAAGCCCCCCTCATCGTACAAACCTGCTCTCGTTT 355
||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 314 ATTGGCCACCTTTGGGATCTGAGTCAAAGACCCCATCATCGTACGAACCTGCTCTCGTTT 373
Query 356 CCATGAAAGGAGAAGTGATTGAGCCTAAGGATATGGACCAAGTACGTGACTTGTTGGTGC 415
|||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct 374 CCATGAAAGGAGAAGTGATTGAGCCTAAGGATATGGACGAAGTACCTGAGTTGTTGGTGC 433
Query 416 ATCAACCGGCCGTGGGAGCAAAACTTCATGTGTTCAGTCCACACATTGAACTTCAACAAG 475
||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 434 ATCAATCAGCCGTGGGAGCAAAACTGCATGTGTTCACTCCACACATTGAACTTCAACAAG 493
Query 476 ACGCAATTTACTGTGGCTCGTCAGGTGAGTATACGCGCTATGTTGGACTTAGAGATGCAA 535
|||||||||||| || |||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 494 ACGCAATTTACT-TGCCTCGTCAGGTGAGTATGCGCGCTACGTTGGACTTAGAGATGGGA 552
Query 536 TCA-TAGTTGGAACGGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTTTGGTAC 594
| | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 553 T-AGTAGTTGGAACAGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTATGGTAC 611
Query 595 AAGAATAAGTTTACATTTCTCAAAGTGGCTTTGAGCAGGATGtttt-tttGGGCGGGCGT 653
||||| |||||| | || ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 612 AAGAAGAAGTTTGTAGTTGTCAAAGTGGCTTTGAGCAGGATGTTTTATTTGG-CGGGCGT 670
Query 654 AGGGCCATCAGAGCTGCTTGTTGACTTTTGTGTCCCACGCCTATCCATCGATTAA 708
||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 671 AGGGCCATCTGTGCTGCTTGTGGACTTTTGTGTTCCACGCCTATCCATCGATTAA 725
> AT1G48180.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G51670.1);
Has 39 Blast hits to 39 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17792449-17793717
REVERSE LENGTH=764
Length=764
Score = 448 bits (242), Expect = 5e-125
Identities = 535/666 (80%), Gaps = 62/666 (9%)
Strand=Plus/Plus
Query 1 ATGGCACTCCCTCCATATGATCCGAATTTCACAA-TTGCATTCTCAATCGGCAGACGCGA 59
||||||||||| || |||||||| ||||||| || |||||||||| | ||| | ||
Sbjct 1 ATGGCACTCCCACCCTATGATCCCAATTTCA-AATTTGCATTCTCTCTTGGC--A--CG- 54
Query 60 AAATTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGGC-TG 118
| ||| ||| ||| ||| ||||||||||||||||||||||| | ||||| || ||
Sbjct 55 --A--TTGCGAAACACCAAGATTACGATGAATCTGCTTCTGCTGCTGTTGTAGC-GCTTG 109
Query 119 AACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGCGTCCACACTGAGTACTCAG 178
| |||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| |
Sbjct 110 ATCTGATAAGCTCTGCACGGTTTGCACTTAAGCTGGATAGTGTCTATACTGAGTACTCTG 169
Query 179 CTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGTAGGCGCAGGCGCAGGGGCAAGCTCA 238
|| ||||| |||||||||| |||| | |||||| | || | | || |||||||||
Sbjct 170 CTAAGTATGTGGTGGACAATGCTGCTGGCTCAC--A----CA-GTG--GGCGCAAGCTCA 220
Query 239 CTGTCAAAGACTGCCTTTTCTTTGCGTTAAAGAAAGGCGGAATACCGAAAGCAGAAGATT 298
||||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct 221 CTGTCAAAGACTGTCTTGAGTTTGCCTTAAACAAAGGCGGCATACCGAAAGCAGAAGATT 280
Query 299 GGCCAC-CTTTGGGATCTGAG-TCAAAGCCCCCCTCATCGTACAAACCTGCTCTCGTTTC 356
|||||| | |||||||||| | | || |||||| |||||||| ||||||| |||||||||
Sbjct 281 GGCCACGC-TTGGGATCTGTGAT-AACGCCCCCATCATCGTATAAACCTGATCTCGTTTC 338
Query 357 CATGAAAGGAGAAGTGATTGAGCCTAAGGA-TATGGACCAAGTACGTGACTTGTTGGTGC 415
||||||||| |||||||||||||| | || ||| || ||| | ||||| || |||||
Sbjct 339 GATGAAAGGACAAGTGATTGAGCCTCA-GACTATTGAGGAAGCATGTGACATGGTGGTGG 397
Query 416 ATCAACCGGCCGTGGGAGCAAAACTT-CATGTGTTC-AGTCCACACATTGAACTTCAACA 473
||||| | | || ||||||||| || ||||||||| || ||||||||||||||||||||
Sbjct 398 ATCAA-C--CAGTAGGAGCAAAA-TTGCATGTGTTCAAG-CCACACATTGAACTTCAACA 452
Query 474 AGACGCAA-T--T-TA-CTG---T-----G-G-CTCGTCAGGTGAGT-ATACGCGCTATG 517
|||||||| | | || ||| | | | | ||||||||||| | | ||||||
Sbjct 453 AGACGCAAGTGCTATAACTGGCATTTACTGTGGCACGTCAGGTGAGCCAGCCA-GCTATG 511
Query 518 TTGGACTTAGAGATGCAATCATAGTTGGAA-CGGAGAAGATCCAAGGAAAGTCCAT-GGC 575
| |||||||||||||| ||||| |||||| || ||||||||||||| ||||| || ||
Sbjct 512 TCGGACTTAGAGATGCCATCATCGTTGGAGTCG-AGAAGATCCAAGGGAAGTCTATTGG- 569
Query 576 AA-TAGTGAAGGTTTGGTACAAGAATAAGTTTACATTTCTCAAAGTGGCTTTGAGCAGGA 634
|| | |||||||| ||||||||||| ||| | |||||| ||||||||| ||||||||
Sbjct 570 AACT-GTGAAGGTATGGTACAAGAA---GTTCATATTTCTGAAAGTGGCTATGAGCAGG- 624
Query 635 TGtttt 640
|| |||
Sbjct 625 TGGTTT 630
> AT3G43200.1 | Symbols: | pseudogene, hypothetical protein, predicted
proteins, Arabidopsis thaliana | chr3:15185766-15186590
REVERSE LENGTH=825
Length=825
Score = 316 bits (171), Expect = 1e-85
Identities = 305/367 (83%), Gaps = 20/367 (5%)
Strand=Plus/Plus
Query 95 CTTCTGCTGCTATCGTAGCGGCTGAACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGG 154
||||||||||||| || | || ||| |||||||||||| || ||||||||||||||||||
Sbjct 122 CTTCTGCTGCTATTGTTGTGGTTGATCTGATAAGCTCTACAAGGCTTGCACTTAAGCTGG 181
Query 155 ATAGCGTCC-ACACTGAGTACTCAGCTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGT 213
|||| | || | ||||||||||| ||||| || ||||||||| | | || | | | |
Sbjct 182 ATAGTG-CCTATACTGAGTACTCGGCTCAATACTTGGTGGAC-CA--T-GTTG-TTGC-T 234
Query 214 AGGCGCAGGCGCAGGGGCAAGCTCACTGTCAAAGACTGCCTTTTC-TTTGCGTTAAAGAA 272
| || || | |||| |||||||||||||||| ||| | || | ||||||||||| ||
Sbjct 235 A-GCTCA--CACAGGCTCAAGCTCACTGTCAAAAACT-ACATTGCTTTTGCGTTAAACAA 290
Query 273 AGGCGGAATACCGAAAGCAGAAGATTGGCCAC-CTTTGGGATCTGAGTCAAAGCCCCCCT 331
||||| || || ||||||||||||||||||| ||| ||||||| ||||||||| | |
Sbjct 291 TGGCGGCATTCCAAAAGCAGAAGATTGGCCACAGTTT-GGATCTGTGTCAAAGCCTCTAT 349
Query 332 CATCGTACAAACCTGCTCTCGTTTC-CATGAAAGGAGAAGTGATTGAGCCTAAGGATATG 390
||||||| ||||||||||| | ||| |||||||||| ||||||||||||||||| ||||
Sbjct 350 CATCGTATAAACCTGCTCTTG-TTCTCATGAAAGGATAAGTGATTGAGCCTAAGAATATA 408
Query 391 GACCAAGTACGTGACTTGTTGGTGCATCAACCGGCCGTGGGAGCAAAACTTCATGTGTTC 450
|| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 409 GAGGAAGTACGTGACTTGTTGGTGCATCAACC--C-GTGGGAGCAAAACTCCATGTGTTC 465
Query 451 AGTCCAC 457
|||||||
Sbjct 466 AGTCCAC 472
> AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:5978678-5980376 FORWARD LENGTH=946
Length=946
Score = 95.3 bits (51), Expect = 7e-19
Identities = 90/108 (83%), Gaps = 6/108 (6%)
Strand=Plus/Plus
Query 99 TGCTGCTATCGTAGCGGCTGAA-CTGATAAGCTCTGCACGGCTT-GCACTTAAGCTGGAT 156
||| ||||| ||||||| |||| ||||| |||||||||||| || | || ||||| |||
Sbjct 214 TGCCGCTATGGTAGCGG-TGAATCTGATTAGCTCTGCACGGGTTATC-CTCAAGCTTGAT 271
Query 157 AGC-GTCCACACTGAGTACTCAGCTCAGTATTTGGTGGACAAAGCTGG 203
|| || | ||||||||||||||||||||||||||||| || |||||
Sbjct 272 -GCTGTGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGG 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5