BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914306 Length=708 Score E Sequences producing significant alignments: (Bits) Value AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 974 0.0 AT1G48180.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 448 5e-125 AT3G43200.1 | Symbols: | pseudogene, hypothetical protein, pre... 316 1e-85 AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 95.3 7e-19 > AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48180.1); Has 37 Blast hits to 37 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749 FORWARD LENGTH=960 Length=960 Score = 974 bits (527), Expect = 0.0 Identities = 655/715 (92%), Gaps = 15/715 (2%) Strand=Plus/Plus Query 1 ATGGCACTCCCTCCATATGATCCGAATTTCACAATT-GCATTCTCAAT-CGGCAGACGCG 58 |||||||||||||| ||||||||||||||||| ||| || || || || ||| ||||||| Sbjct 19 ATGGCACTCCCTCCCTATGATCCGAATTTCAC-ATTGGCTTTTTC-ATACGGTAGACGCG 76 Query 59 A-AA-AT-TTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 115 | || | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 ATAATGTCTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 136 Query 116 CTGAACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGCGTCCACACTGAGTACT 175 ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 137 TTGAGCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCGCACTGAGTACT 196 Query 176 CAGCTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGTAGGCGCAGGCGCAGGGGCAAGC 235 |||||||||||||||||||||||||||| |||||| | | |||||||||| |||||| Sbjct 197 CAGCTCAGTATTTGGTGGACAAAGCTGG---CTCACGCAACCTCAGGCGCAGGCGCAAGC 253 Query 236 TCACTGTCAAAGACTGCCTTTTCTTTGCGTTAAAGAAAGGCGGAATACCGAAAGCAGAAG 295 |||||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||| Sbjct 254 TCACTGTCAAGGACTGCCTTAACTTTGCGTTAAAGAAAGGCGGCATACCGAGAGCAGAAG 313 Query 296 ATTGGCCACCTTTGGGATCTGAGTCAAAGCCCCCCTCATCGTACAAACCTGCTCTCGTTT 355 ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 314 ATTGGCCACCTTTGGGATCTGAGTCAAAGACCCCATCATCGTACGAACCTGCTCTCGTTT 373 Query 356 CCATGAAAGGAGAAGTGATTGAGCCTAAGGATATGGACCAAGTACGTGACTTGTTGGTGC 415 |||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| Sbjct 374 CCATGAAAGGAGAAGTGATTGAGCCTAAGGATATGGACGAAGTACCTGAGTTGTTGGTGC 433 Query 416 ATCAACCGGCCGTGGGAGCAAAACTTCATGTGTTCAGTCCACACATTGAACTTCAACAAG 475 ||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 434 ATCAATCAGCCGTGGGAGCAAAACTGCATGTGTTCACTCCACACATTGAACTTCAACAAG 493 Query 476 ACGCAATTTACTGTGGCTCGTCAGGTGAGTATACGCGCTATGTTGGACTTAGAGATGCAA 535 |||||||||||| || |||||||||||||||| ||||||| |||||||||||||||| | Sbjct 494 ACGCAATTTACT-TGCCTCGTCAGGTGAGTATGCGCGCTACGTTGGACTTAGAGATGGGA 552 Query 536 TCA-TAGTTGGAACGGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTTTGGTAC 594 | | |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 553 T-AGTAGTTGGAACAGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTATGGTAC 611 Query 595 AAGAATAAGTTTACATTTCTCAAAGTGGCTTTGAGCAGGATGtttt-tttGGGCGGGCGT 653 ||||| |||||| | || ||||||||||||||||||||||||||| ||||| ||||||| Sbjct 612 AAGAAGAAGTTTGTAGTTGTCAAAGTGGCTTTGAGCAGGATGTTTTATTTGG-CGGGCGT 670 Query 654 AGGGCCATCAGAGCTGCTTGTTGACTTTTGTGTCCCACGCCTATCCATCGATTAA 708 ||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 671 AGGGCCATCTGTGCTGCTTGTGGACTTTTGTGTTCCACGCCTATCCATCGATTAA 725 > AT1G48180.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17792449-17793717 REVERSE LENGTH=764 Length=764 Score = 448 bits (242), Expect = 5e-125 Identities = 535/666 (80%), Gaps = 62/666 (9%) Strand=Plus/Plus Query 1 ATGGCACTCCCTCCATATGATCCGAATTTCACAA-TTGCATTCTCAATCGGCAGACGCGA 59 ||||||||||| || |||||||| ||||||| || |||||||||| | ||| | || Sbjct 1 ATGGCACTCCCACCCTATGATCCCAATTTCA-AATTTGCATTCTCTCTTGGC--A--CG- 54 Query 60 AAATTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGGC-TG 118 | ||| ||| ||| ||| ||||||||||||||||||||||| | ||||| || || Sbjct 55 --A--TTGCGAAACACCAAGATTACGATGAATCTGCTTCTGCTGCTGTTGTAGC-GCTTG 109 Query 119 AACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGCGTCCACACTGAGTACTCAG 178 | |||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| | Sbjct 110 ATCTGATAAGCTCTGCACGGTTTGCACTTAAGCTGGATAGTGTCTATACTGAGTACTCTG 169 Query 179 CTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGTAGGCGCAGGCGCAGGGGCAAGCTCA 238 || ||||| |||||||||| |||| | |||||| | || | | || ||||||||| Sbjct 170 CTAAGTATGTGGTGGACAATGCTGCTGGCTCAC--A----CA-GTG--GGCGCAAGCTCA 220 Query 239 CTGTCAAAGACTGCCTTTTCTTTGCGTTAAAGAAAGGCGGAATACCGAAAGCAGAAGATT 298 ||||||||||||| ||| ||||| ||||| |||||||| ||||||||||||||||||| Sbjct 221 CTGTCAAAGACTGTCTTGAGTTTGCCTTAAACAAAGGCGGCATACCGAAAGCAGAAGATT 280 Query 299 GGCCAC-CTTTGGGATCTGAG-TCAAAGCCCCCCTCATCGTACAAACCTGCTCTCGTTTC 356 |||||| | |||||||||| | | || |||||| |||||||| ||||||| ||||||||| Sbjct 281 GGCCACGC-TTGGGATCTGTGAT-AACGCCCCCATCATCGTATAAACCTGATCTCGTTTC 338 Query 357 CATGAAAGGAGAAGTGATTGAGCCTAAGGA-TATGGACCAAGTACGTGACTTGTTGGTGC 415 ||||||||| |||||||||||||| | || ||| || ||| | ||||| || ||||| Sbjct 339 GATGAAAGGACAAGTGATTGAGCCTCA-GACTATTGAGGAAGCATGTGACATGGTGGTGG 397 Query 416 ATCAACCGGCCGTGGGAGCAAAACTT-CATGTGTTC-AGTCCACACATTGAACTTCAACA 473 ||||| | | || ||||||||| || ||||||||| || |||||||||||||||||||| Sbjct 398 ATCAA-C--CAGTAGGAGCAAAA-TTGCATGTGTTCAAG-CCACACATTGAACTTCAACA 452 Query 474 AGACGCAA-T--T-TA-CTG---T-----G-G-CTCGTCAGGTGAGT-ATACGCGCTATG 517 |||||||| | | || ||| | | | | ||||||||||| | | |||||| Sbjct 453 AGACGCAAGTGCTATAACTGGCATTTACTGTGGCACGTCAGGTGAGCCAGCCA-GCTATG 511 Query 518 TTGGACTTAGAGATGCAATCATAGTTGGAA-CGGAGAAGATCCAAGGAAAGTCCAT-GGC 575 | |||||||||||||| ||||| |||||| || ||||||||||||| ||||| || || Sbjct 512 TCGGACTTAGAGATGCCATCATCGTTGGAGTCG-AGAAGATCCAAGGGAAGTCTATTGG- 569 Query 576 AA-TAGTGAAGGTTTGGTACAAGAATAAGTTTACATTTCTCAAAGTGGCTTTGAGCAGGA 634 || | |||||||| ||||||||||| ||| | |||||| ||||||||| |||||||| Sbjct 570 AACT-GTGAAGGTATGGTACAAGAA---GTTCATATTTCTGAAAGTGGCTATGAGCAGG- 624 Query 635 TGtttt 640 || ||| Sbjct 625 TGGTTT 630 > AT3G43200.1 | Symbols: | pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana | chr3:15185766-15186590 REVERSE LENGTH=825 Length=825 Score = 316 bits (171), Expect = 1e-85 Identities = 305/367 (83%), Gaps = 20/367 (5%) Strand=Plus/Plus Query 95 CTTCTGCTGCTATCGTAGCGGCTGAACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGG 154 ||||||||||||| || | || ||| |||||||||||| || |||||||||||||||||| Sbjct 122 CTTCTGCTGCTATTGTTGTGGTTGATCTGATAAGCTCTACAAGGCTTGCACTTAAGCTGG 181 Query 155 ATAGCGTCC-ACACTGAGTACTCAGCTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGT 213 |||| | || | ||||||||||| ||||| || ||||||||| | | || | | | | Sbjct 182 ATAGTG-CCTATACTGAGTACTCGGCTCAATACTTGGTGGAC-CA--T-GTTG-TTGC-T 234 Query 214 AGGCGCAGGCGCAGGGGCAAGCTCACTGTCAAAGACTGCCTTTTC-TTTGCGTTAAAGAA 272 | || || | |||| |||||||||||||||| ||| | || | ||||||||||| || Sbjct 235 A-GCTCA--CACAGGCTCAAGCTCACTGTCAAAAACT-ACATTGCTTTTGCGTTAAACAA 290 Query 273 AGGCGGAATACCGAAAGCAGAAGATTGGCCAC-CTTTGGGATCTGAGTCAAAGCCCCCCT 331 ||||| || || ||||||||||||||||||| ||| ||||||| ||||||||| | | Sbjct 291 TGGCGGCATTCCAAAAGCAGAAGATTGGCCACAGTTT-GGATCTGTGTCAAAGCCTCTAT 349 Query 332 CATCGTACAAACCTGCTCTCGTTTC-CATGAAAGGAGAAGTGATTGAGCCTAAGGATATG 390 ||||||| ||||||||||| | ||| |||||||||| ||||||||||||||||| |||| Sbjct 350 CATCGTATAAACCTGCTCTTG-TTCTCATGAAAGGATAAGTGATTGAGCCTAAGAATATA 408 Query 391 GACCAAGTACGTGACTTGTTGGTGCATCAACCGGCCGTGGGAGCAAAACTTCATGTGTTC 450 || |||||||||||||||||||||||||||| | |||||||||||||| ||||||||| Sbjct 409 GAGGAAGTACGTGACTTGTTGGTGCATCAACC--C-GTGGGAGCAAAACTCCATGTGTTC 465 Query 451 AGTCCAC 457 ||||||| Sbjct 466 AGTCCAC 472 > AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5978678-5980376 FORWARD LENGTH=946 Length=946 Score = 95.3 bits (51), Expect = 7e-19 Identities = 90/108 (83%), Gaps = 6/108 (6%) Strand=Plus/Plus Query 99 TGCTGCTATCGTAGCGGCTGAA-CTGATAAGCTCTGCACGGCTT-GCACTTAAGCTGGAT 156 ||| ||||| ||||||| |||| ||||| |||||||||||| || | || ||||| ||| Sbjct 214 TGCCGCTATGGTAGCGG-TGAATCTGATTAGCTCTGCACGGGTTATC-CTCAAGCTTGAT 271 Query 157 AGC-GTCCACACTGAGTACTCAGCTCAGTATTTGGTGGACAAAGCTGG 203 || || | ||||||||||||||||||||||||||||| || ||||| Sbjct 272 -GCTGTGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGG 318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34309922401 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5