BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914333
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51810.1 | Symbols: | Leucine-rich repeat protein kinase fa... 507 6e-143
AT3G21340.1 | Symbols: | Leucine-rich repeat protein kinase fa... 453 8e-127
AT2G04300.1 | Symbols: | Leucine-rich repeat protein kinase fa... 366 1e-100
AT3G46410.1 | Symbols: | Protein kinase superfamily protein | ... 237 9e-62
AT3G46384.1 | Symbols: | pseudogene, receptor-related protein ... 150 1e-35
> AT1G51810.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:19227119-19232359 REVERSE LENGTH=2666
Length=2666
Score = 507 bits (274), Expect = 6e-143
Identities = 409/474 (86%), Gaps = 10/474 (2%)
Strand=Plus/Plus
Query 1 ATGGTTCATAGGGACGTCAAAACCACAAATATATTGTTGAATGAACACTTT-GAGGCCAA 59
||||||||||| || || ||||||||||||||||||||||||||||| ||| || ||||
Sbjct 2142 ATGGTTCATAGAGATGTTAAAACCACAAATATATTGTTGAATGAACA-TTTCGATACCAA 2200
Query 60 ACTTGCTGATTTTGGACTTTCGAGGTCATTTCCAATTGAAGGCGAGACTCATGTGTCAAC 119
||||||||||||||| |||||||| ||||| || || ||||| || |||||||| |||||
Sbjct 2201 ACTTGCTGATTTTGGGCTTTCGAGATCATTCCCGATAGAAGGGGAAACTCATGTATCAAC 2260
Query 120 AGTTGTTGCTGGTACTATTGGATACCTTGATCCCGAATATTACCGTACAAATAGGTTGAC 179
||||||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||
Sbjct 2261 TGTTGTTGCTGGAACTATTGGTTACCTCGATCCCGAATATTACCGAACAAATTGGTTGAC 2320
Query 180 AGA-AAAGAGTGACGTCTACAGTTTTGGTA-TTGTAATATTGGAGATAATTACAAACAAA 237
|| ||| ||||| || || |||||||| | ||||| |||||| ||| ||||||||| ||
Sbjct 2321 GGAGAAA-AGTGATGTGTATAGTTTTGG-AGTTGTATTATTGGTGATGATTACAAACCAA 2378
Query 238 CCAGTGATTGACCAAAACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCTT 297
|| ||||| ||||||||||| |||||| |||| |||||||||||||| ||| |||||||
Sbjct 2379 CCCGTGATAGACCAAAACCGCGAAAAGAGACATATAGCAGAATGGGTGGGAGGAATGCTT 2438
Query 298 ACAAAAGGAGACATCAAAAGCATTACGGATCCAAGTCTCCATGGAGATTACGACTCTGGT 357
|| ||||||||||||||||| ||||| ||||||| ||||| ||||||||| | ||||||
Sbjct 2439 ACGAAAGGAGACATCAAAAGTATTACTGATCCAAATCTCCTTGGAGATTATAATTCTGGT 2498
Query 358 TCAGTTTGGAAAGCTGTCGAATTGGCAATGTCGTGTCTGAATCCTTCTTCGATAA-ATAG 416
|| |||||||||||||| ||| | |||||||| ||| |||||||||||||||| | | ||
Sbjct 2499 TCTGTTTGGAAAGCTGTTGAACTAGCAATGTCATGTATGAATCCTTCTTCGATGACA-AG 2557
Query 417 ACCGACAATGACTCAAGTTGTTTCTGAACT-AAACGAGTGTTTAGCATCAGAAA 469
|||||||||| |||||||||||| |||||| ||| |||||||| || || ||||
Sbjct 2558 ACCGACAATGTCTCAAGTTGTTTTTGAACTGAAA-GAGTGTTTGGCCTCTGAAA 2610
> AT3G21340.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:7511787-7515937 REVERSE LENGTH=2761
Length=2761
Score = 453 bits (245), Expect = 8e-127
Identities = 448/545 (82%), Gaps = 18/545 (3%)
Strand=Plus/Plus
Query 1 ATGGTTCATAGGGACGTCAAAACCACAAATATATTGTTGAATGAACACTTTGAGGCCAAA 60
|||||||||||||| || |||||||||||||||||||||||||||||| | | || ||
Sbjct 2137 ATGGTTCATAGGGATGTTAAAACCACAAATATATTGTTGAATGAACACCTCCATGCTAAG 2196
Query 61 CTTGCTGATTTTGGACTTTCGAGGTCATTTCCAATTGAAGGCGAGACTCATGTGTCAACA 120
|| ||||||||||| |||||||| || |||||||||||||| || |||||||||||||||
Sbjct 2197 CTAGCTGATTTTGGGCTTTCGAGATCTTTTCCAATTGAAGGAGAAACTCATGTGTCAACA 2256
Query 121 GTTGTTGCTGGTACTATTGGATACCTTGATCCCGAATATTACCGTACAAATAGGTTGA-C 179
||||||||||| ||| ||||||||||||||| ||||||||||| |||||| |||||| |
Sbjct 2257 GTTGTTGCTGGAACTCCTGGATACCTTGATCCAGAATATTACCGAACAAATTGGTTGAAC 2316
Query 180 -AGAAAAGAGTGACGTCTACAGTTTTGGTATTGTAATATTGGAGATAATTACAAACAAAC 238
||||||| ||| || || || ||||| |||||| |||| ||||| || |||||| |||
Sbjct 2317 GAGAAAAG--TGATGTTTATAGCTTTGGAATTGTACTATTAGAGATCATCACAAACCAAC 2374
Query 239 CAGTGATTGACCAAAACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCTTA 298
||||| | |||| |||||||| | ||| |||||||||||||| || ||||||||
Sbjct 2375 TTGTGATCAATCAAAGTCGTGAAAAACCACATATAGCAGAATGGGTGGGGTTAATGCTTA 2434
Query 299 CAAAAGGAGACAT-CAAAAGCATTACGGATCCAAGTCTCCATGGAGATTACGACTCTGGT 357
||||||||||||| ||||| ||||| |||||||| || |||| ||||| |||||||||
Sbjct 2435 CAAAAGGAGACATTCAAAA-CATTATGGATCCAAAACTTTATGGTGATTATGACTCTGGT 2493
Query 358 TCAGTTTGGAAAGCTGTCGAATTGGCAATGTCGTGTCTGAATCCTTCTTC-GATAAATAG 416
|| || |||| ||| || ||| | |||||||| ||||| ||||||||||| | || | ||
Sbjct 2494 TCTGTCTGGAGAGCAGTTGAACTAGCAATGTCATGTCTAAATCCTTCTTCAGCTAGA-AG 2552
Query 417 ACCGACAATGACTCAAGTTGTT-TCTGAACTAAACGAGTGTTTAG-CATCA-GAAAATTT 473
||| |||||| ||||||||||| || ||| ||||||| ||||| | ||| | |||||
Sbjct 2553 ACCAACAATGTCTCAAGTTGTTATC-GAATTAAACGAATGTTT-GTCAT-ATGAAAACGC 2609
Query 474 GAGGGGAGGA-CAGAGTCAAGAGATGGATTCACAGAGTTCCATAGAAGTGAGTATGA-CA 531
|| |||||| | ||||||| | ||| | ||| ||||||| |||||||| || |||| |
Sbjct 2610 AAGAGGAGGAAC-GAGTCAAAACATGAACTCAGAGAGTTCAATAGAAGTCAGCATGAAC- 2667
Query 532 TTTGA 536
|||||
Sbjct 2668 TTTGA 2672
> AT2G04300.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:1493009-1497016 FORWARD LENGTH=2658
Length=2658
Score = 366 bits (198), Expect = 1e-100
Identities = 411/513 (80%), Gaps = 18/513 (4%)
Strand=Plus/Plus
Query 1 ATGGTTCATAGGGACGTCAAAACCACAAATATATTGTTGAATGAACACTTTGAGGCCAAA 60
||||| ||||| || |||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1984 ATGGTACATAGAGATGTCAAAACCACAAATATATTGTTGGATGAACATTTTCAGGCCAAG 2043
Query 61 CTTGCTGATTTTGGACTTTCGAGGTCATTTCCAATTGAAGGCGAGACTCATGT-GTCAAC 119
||||||||||| || |||||||| || ||||| ||||||| || || | ||| | | ||
Sbjct 2044 CTTGCTGATTTCGGTCTTTCGAGATCTTTTCCTCTTGAAGGAGAAACCCGTGTGGAC-AC 2102
Query 120 AGTTGTTGCTGGTACTATTGGATACCTTGATCCCGAATATTACCGTACAAATAGGTTG-A 178
|||||||||||| ||| ||| ||||||||||| |||||||| || |||||| ||||| |
Sbjct 2103 AGTTGTTGCTGGAACTCCTGGGTACCTTGATCCAGAATATTATCGAACAAATTGGTTGAA 2162
Query 179 CAGA-AAAGAGTGACGTCTACAGTTTTGGTATTGTAATATTGGAGATAATTACAAACAAA 237
| || ||| ||||| || || || ||||| || ||| |||| ||||| || |||||| ||
Sbjct 2163 C-GAGAAA-AGTGATGTTTATAGCTTTGGAATCGTACTATTAGAGATCATCACAAACCAA 2220
Query 238 CCA-GTGATTGACCAAAACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCT 296
|| ||||| |||||| |||||||| | ||| ||||| |||||||| || |||||
Sbjct 2221 -CATGTGATCAACCAAAGTCGTGAAAAACCACATATAGCTGAATGGGTTGGGGTGATGCT 2279
Query 297 TACAAAAGGAGACATCAAAAGCATTACGGATCCAAG-TCTCCATGGAGATTACGACT-CT 354
|||||||||||||||||||||||||| ||||||| | | ||||||||| || | ||
Sbjct 2280 TACAAAAGGAGACATCAAAAGCATTATAGATCCAAAATTTAG-TGGAGATTATGA-TGCT 2337
Query 355 GGTTCAGTTTGGAAAGCTGTCGAATTGGCAATGTCGTGTCTGAATCCTTCTTCGA-TAAA 413
||||| || |||| ||| || ||| | |||||||||||| | ||||||||||| | | |
Sbjct 2338 GGTTCTGTCTGGAGAGCAGTTGAACTAGCAATGTCGTGTGTAAATCCTTCTTCAACTGGA 2397
Query 414 TAGACCGACAATGACTCAAGTTGTT-TCTGAACTAAACGAGTGTTTAGCATCAGAAAATT 472
||||| || ||| |||||||||| || ||| |||| || ||||| ||||||||||| |
Sbjct 2398 -AGACCAACCATGTCTCAAGTTGTAATC-GAATTAAATGAATGTTTGGCATCAGAAAACT 2455
Query 473 TGAGGGGAGGACA-GAGTCAAGAGATGGATTCA 504
||| ||||| | ||||||| | ||||| |||
Sbjct 2456 CAAGGAGAGGA-ATGAGTCAAAACATGGAGTCA 2487
> AT3G46410.1 | Symbols: | Protein kinase superfamily protein
| chr3:17079093-17080684 FORWARD LENGTH=876
Length=876
Score = 237 bits (128), Expect = 9e-62
Identities = 372/486 (77%), Gaps = 31/486 (6%)
Strand=Plus/Plus
Query 1 ATGGTTCATAGGGACGTCAAAACCACAAATATATTGTTGAATGAACACTTTGA-GGCCAA 59
||||| ||||| || ||||||| ||||||||||||||| | || || ||| | |||||
Sbjct 322 ATGGTACATAGAGATGTCAAAAGTACAAATATATTGTTGGACGATCAATTT-ACTGCCAA 380
Query 60 ACTTGCTGATTTTGGACTTTCGAGGTCATTTCCAA-TTGAAGGCGAGA-CTCATGTGTCA 117
| |||| |||||||| ||||| || || ||||||| | | || || | ||||| | |||
Sbjct 381 AATTGCGGATTTTGGGCTTTCAAGATC-TTTCCAACTCGGAGATGA-ATCTCATATTTCA 438
Query 118 ACAGTTGTTGCTGGTACTATTGGATACCTTGATCCCGAATATTACCGTACAAATAGGTTG 177
|||||||||||||||||| ||||||||||||||| | | | | || | |||||
Sbjct 439 ACAGTTGTTGCTGGTACTCCTGGATACCTTGATCCTG-A-A--A-CG----GGTCGGTTG 489
Query 178 ACAGAAAAGAGTGACGTCTACAGTTTTGGTATTGTAATATTGGAGATAATTACAAACAAA 237
| || | ||| || |||||||| || || ||||| |||||||||| || |||||| ||
Sbjct 490 GCTGAGATGAGCGATGTCTACAGCTTCGGGATTGTGTTATTGGAGATGATGACAAACCAA 549
Query 238 CCAGTGATTGACCAAAACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCTT 297
| ||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 550 CGTGTGATTGACCAAAACCGTGAAAAGCGACACATAACAGAATGGGTAGCTTTAGTGCTT 609
Query 298 A-CAAAAGGAGACATCAA-AAGCATTACGGATCC-AAGTCTCCATGGAGATTACGACTCT 354
| || | |||||||| | ||| || | |||||| || ||| | || |||||| ||||
Sbjct 610 AACAGA-GGAGACATTACCAAG-ATCATGGATCCTAA-TCTTTACGGCGATTACAACTCA 666
Query 355 GGTTCAGTTTGGAAAGCTGTCGAATTGGCAATGTCGTGT-CTGAATCCTTCTTC-GATAA 412
||| |||||||||||| | |||||||| ||||| ||| | || || ||||| || ||
Sbjct 667 AATTCTGTTTGGAAAGCTCTTGAATTGGCTATGTCATGTGCA-AACCCATCTTCCGAAAA 725
Query 413 ATAGACCGA-CAATGACTCAAGTTGTTT-CTGAACTAAACGAGTGT-TTAGCATCAGAAA 469
| |||| | || || | |||||| | | | |||||| |||||| ||| | || ||||
Sbjct 726 AC-GACCAAGCA-TGTCCCAAGTTATCAGC-GTACTAAAAGAGTGTCTTA-CTTCTGAAA 781
Query 470 ATTTGA 475
| ||||
Sbjct 782 ACTTGA 787
> AT3G46384.1 | Symbols: | pseudogene, receptor-related protein
kinase homolog, similar to receptor-like protein kinase homolog;
blastp match of 48% identity and 1.1e-26 P-value to GP|9837280|gb|AAG00510.1||AF285172
leaf senescence-associated
receptor-like protein kinase {Phaseolus vulgaris} | chr3:17064271-17065121
FORWARD LENGTH=851
Length=851
Score = 150 bits (81), Expect = 1e-35
Identities = 164/204 (80%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 193 GTCTACAGTTTTGGTATTGTAATATTGGAGATAATTACAAACAAACCAGTGATTGACCAA 252
|||||||| || || ||||| |||||||||| || |||||| ||| ||||||||||||
Sbjct 367 GTCTACAGCTTCGGGATTGTGTTATTGGAGATGATGACAAACCAACGTGTGATTGACCAA 426
Query 253 AACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCTTA-CAAAAGGAGACAT 311
||||||||||||||||||||| |||||||||||| | |||||| || | ||||||||
Sbjct 427 AACCGTGAAAAGCGACACATAACAGAATGGGTAGCTTTAGTGCTTAACAGA-GGAGACAT 485
Query 312 CAA-AAGCATTACGGATCC-AAGTCTCCATGGAGATTACGACTCTGGTTCAGTTTGGAAA 369
| ||| || | |||||| || ||| | || |||||| |||| ||| |||||||||
Sbjct 486 TACCAAG-ATCATGGATCCTAA-TCTTTACGGCGATTACAACTCAAATTCTGTTTGGAAA 543
Query 370 GCTGTCGAATTGGCAATGTCGTGT 393
||| | |||||||| ||||| |||
Sbjct 544 GCTCTTGAATTGGCTATGTCATGT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5