BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914348
Length=2244
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51900.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1256 0.0
> AT1G51900.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr1:19279884-19282895 REVERSE LENGTH=2325
Length=2325
Score = 1256 bits (680), Expect = 0.0
Identities = 928/1043 (89%), Gaps = 35/1043 (3%)
Strand=Plus/Plus
Query 652 GAGTCACCACAGGAGGTGTATAAATTTAT-CCTCACCGATGTCAAAGACGAGAGAAGCAA 710
||||||| ||| ||||||||||||||| | |||||||||||| || |||||||||||
Sbjct 631 GAGTCACTACACGAGGTGTATAAATTT-TGCCTCACCGATGT---TGATGAGAGAAGCAA 686
Query 711 GAAAGAGACATCAATGAAAGATGATTACATAGAAGATGTGATGAAG--T-CTAGATTGTT 767
|||||||||||||||||||||||||||||||||| | | | |||| | ||||||||||
Sbjct 687 GAAAGAGACATCAATGAAAGATGATTACATAGAACA--T-AAGAAGTCTACTAGATTGTT 743
Query 768 GGCTGAAAAAGCGAAGAAGTCAGGTCACCGTTTAGAAATATTAAGGCCGGAATATAAACC 827
||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 744 GGCTGAAAATGCGAAGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGGAATCTAAACC 803
Query 828 TGAGATTGAAAATCAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATATGGA 887
||||| |||||| |||| |||||||||||||||||| |||||| ||||||||| ||||
Sbjct 804 TGAGACTGAAAAAGAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGA 863
Query 888 TATTACATCTTATGAAGAGCCACCACACGAGGTGTATAAATTTAGCATCACCAATTTCGA 947
||||| | |||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 864 TATTAGTTGTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGA 923
Query 948 AGAAGGGATAATGGAAGATGATTAC-GTAGAAGATGTGAAGTGTAGAACGTTGGATGAAA 1006
||||| ||||||||||||||||||| | ||||||| |||||||||||| ||||||||| |
Sbjct 924 AGAAGAGATAATGGAAGATGATTACAG-AGAAGATATGAAGTGTAGAATGTTGGATGATA 982
Query 1007 TAATGAAGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAA-A-TATAAACCTGAGA 1063
|| ||||||| |||||||||||| |||||||||||| | ||||| | |||||||||||||
Sbjct 983 TAGTGAAGAATTCCGGTCACCGTGTAGAAATATCAAGGCCGGAATATTATAAACCTGAGA 1042
Query 1064 ATGAAAAACAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTA 1123
|||||||||||| |||||| ||||||||||||||||||| ||||||||| | ||||||
Sbjct 1043 TTGAAAAACAGGTATATGAAAAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTA 1102
Query 1124 GATCTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 1183
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 1103 GATCTTATGAAGAGTCACCAAACGAGGTGTATAAATTTAGCCTCACTGATTTGGAAGAAG 1162
Query 1184 AGATAATGGAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTGGATGAAATAACGA 1243
||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1163 AGATAATGGAAAATGACTCCATAGAAGGTGTGAAGTGTAGAATGTTGGATGAAATAATGA 1222
Query 1244 AGAAGTCCGGTCACCGTTTAGAAATATCAAGG-CGTGAATATAAACCTGAGAATGAAAAA 1302
||||||||||||||| |||| ||||||||||| || |||||||||||||||| |||||||
Sbjct 1223 AGAAGTCCGGTCACCATTTAAAAATATCAAGGCCG-GAATATAAACCTGAGATTGAAAAA 1281
Query 1303 CAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGAGATCTTAT 1362
||||| |||||||||| ||||||||||||||| ||||| ||||||||||| |||| ||||
Sbjct 1282 CAGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTAT 1341
Query 1363 GAAGAGTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1422
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1342 GAAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATG 1401
Query 1423 GAAGATGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGAA-A--TCC 1479
|||||||||||||| |||| | ||||||||||| |||||||||| ||| |||| | |||
Sbjct 1402 GAAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTGGATGATATATTGAAGAAGTCC 1461
Query 1480 GGTCACCGTTTAGAAATATCAAGCCGGGAATATAA-A--CCTGAGATTGAAAAACAGGTC 1536
||||||||||||||||||||||| ||| ||||||| | ||||||||||||| |||||||
Sbjct 1462 GGTCACCGTTTAGAAATATCAAGGCGGCAATATAATAAACCTGAGATTGAAATACAGGTC 1521
Query 1537 AATGAAGAAA-AAGAGAAGAAAGTAATGAATA----T--GGATATTAGATGTGCTGATCA 1589
|||||| || |||||||||||||||| |||| | ||||||||||| || |||| |
Sbjct 1522 AATGAA-AAGGAAGAGAAGAAAGTAATCAATACGGATATGGATATTAGATATGATGATGA 1580
Query 1590 GTCACCATACGAGGTGTATAAA-ATT--AGCCTCACCGATGTTGAAGAAGAGAGAAGCAA 1646
||||||| | |||||| | | | ||| || ||||| |||| ||||||||||||||||||
Sbjct 1581 GTCACCAGAAGAGGTGGAGACATATTCTAGTCTCACGGATGATGAAGAAGAGAGAAGCAA 1640
Query 1647 GGAAGATACATCAATGGAAGATG 1669
|||||||||||||||||||||||
Sbjct 1641 GGAAGATACATCAATGGAAGATG 1663
Score = 846 bits (458), Expect = 0.0
Identities = 797/952 (84%), Gaps = 58/952 (6%)
Strand=Plus/Plus
Query 521 AAATAGCCAAGGAA-TCGGGTTACCGTTTAGAAATACTAAGGCTGGAA-CATAAATCTGA 578
|||| || || ||| || ||| || ||||||||||| |||||| |||| | |||| ||||
Sbjct 750 AAAT-GCGAA-GAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGGAATC-TAAACCTGA 806
Query 579 GAATGAAAACA-AGGT-ATTTGACGTGAAAGAGAAGAAAGTAATGGATTTGGATAAAGAA 636
|| |||||| | |||| | ||| | | ||||||||| |||||||||| |||| | |
Sbjct 807 GACTGAAAA-AGAGGTCA-ATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGAT-GTGGA 863
Query 637 GA-GAGAAG-CAAGAAAGAGTCACCACAGGAGGTGTATAAATTTATCCTCACCGATGTCA 694
| || | | | ||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 864 TATTAGTTGTTATG-AAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGAT-T-- 919
Query 695 AAGACGAGAGAAGCAAGAAAGAGACATCAATGAAAGATGATTACATAGAAGATGTGATGA 754
| | ||| ||||| || |||| |||||||||||| |||||| | ||||
Sbjct 920 ---TC-------G-AAG-AAGAG--AT-AATGGAAGATGATTACAGAGAAGA--T-ATGA 961
Query 755 AGTCTAGATTGTTGGCTGAAAAAGCGAAGAAGTCAGGTCACCGTTTAGAAATATTAAGGC 814
||| |||| |||||| ||| | || |||||| || ||||||||| ||||||||| |||||
Sbjct 962 AGTGTAGAATGTTGGATGATATAGTGAAGAATTCCGGTCACCGTGTAGAAATATCAAGGC 1021
Query 815 CGG-A-A-TATAAACCTGAGATTGAAAATCAGGTTTATGAAGAGGAAGAGAAGAAAGTAA 871
||| | | |||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 1022 CGGAATATTATAAACCTGAGATTGAAAAACAGGTATATGAAAAGGAAGAGAAGAAAGTAA 1081
Query 872 TTGATCCGGATATGGATATTACATCTTATGAAGAGCCACCACACGAGGTGTATAAATTTA 931
| ||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 1082 TGGATCCGGATATCTATATTAGATCTTATGAAGAGTCACCAAACGAGGTGTATAAATTTA 1141
Query 932 GCATCACCAATTTCGAAGAAGGGATAATGGAAGATGATTACGTAGAAGATGTGAAGTGTA 991
|| |||| |||| ||||||| |||||||||| |||| | | |||||| |||||||||||
Sbjct 1142 GCCTCACTGATTTGGAAGAAGAGATAATGGAAAATGACTCCATAGAAGGTGTGAAGTGTA 1201
Query 992 GAACGTTGGATGAAATAATGAAGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAAA 1050
||| ||||||||||||||||||||| |||||||||| |||| ||||||||| | ||| ||
Sbjct 1202 GAATGTTGGATGAAATAATGAAGAAGTCCGGTCACCATTTAAAAATATCAAGGCCGG-AA 1260
Query 1051 TATAAACCTGAGAATGAAAAACAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCG 1110
||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1261 TATAAACCTGAGATTGAAAAACAGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCA 1320
Query 1111 GATGTGGATATTAGATCTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACC 1170
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1321 GATGTGGATATTAGATGTTATGAAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACC 1380
Query 1171 GATTTCGAAGAAGAGATAATGGAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTG 1230
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1381 GATTTCGAAGAAGAGATAATGGAAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTG 1440
Query 1231 GATGAAATAACGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGGCGTG-AATATAA-A- 1287
||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 1441 GATGATATATTGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGGCG-GCAATATAATAA 1499
Query 1288 -CCTGAGAATGAAAAACAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGT 1346
||||||| ||||| |||||| ||||| ||| ||||||||||||||| || ||||| |
Sbjct 1500 ACCTGAGATTGAAATACAGGTCAATGAAAAGGAAGAGAAGAAAGTAATCAATACGGATAT 1559
Query 1347 GGATATGAGATCTTATGAAGAGTCACCACACA-AGGTGTATA-A-ATT-TAGCCTCACCG 1402
|||||| |||| | |||| ||||||||| | | ||||| | | | ||| ||| ||||| |
Sbjct 1560 GGATATTAGATATGATGATGAGTCACCAGA-AGAGGTGGAGACATATTCTAGTCTCACGG 1618
Query 1403 ATT-TCGAAGAAGAGATAATGGAAG-ATGATTACATC---G-AAGATGTGAA 1448
|| | |||||||||| || | ||| | ||| ||||| | ||||||||||
Sbjct 1619 ATGAT-GAAGAAGAGAGAA-GCAAGGAAGAT-ACATCAATGGAAGATGTGAA 1667
Score = 784 bits (424), Expect = 0.0
Identities = 630/725 (87%), Gaps = 32/725 (4%)
Strand=Plus/Plus
Query 957 AATGGAAGATGATTACGTAGAAGATGTGAAG--T-GTAGAACGTTGGATGAAATAAT--G 1011
|||| ||||||||||| ||||| || |||| | |||| ||||| || || ||| |
Sbjct 699 AATGAAAGATGATTACATAGAACATAAGAAGTCTACTAGATTGTTGGCTG-AA-AATGCG 756
Query 1012 AAGAAATCCGGTCACCGTTTAGAAATATCAAAG-CGGAAATATAAACCTGAGAATGAAAA 1070
||||| ||||||||| |||||||||||| || | ||| ||| ||||||||||| ||||||
Sbjct 757 AAGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCGG-AATCTAAACCTGAGACTGAAAA 815
Query 1071 ACAGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTAGATCTTA 1130
| |||| |||||||||||||||||| |||||| |||||||||||||||||||| | |||
Sbjct 816 AGAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGATATTAGTTGTTA 875
Query 1131 TGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAAT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAAT 935
Query 1191 GGAAGATGATTACATAGAAGATGTGAAGTGTAGAATGTTGGATGAAATAACGAAGAAGTC 1250
|||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||| ||
Sbjct 936 GGAAGATGATTACAGAGAAGATATGAAGTGTAGAATGTTGGATGATATAGTGAAGAATTC 995
Query 1251 CGGTCACCGTTTAGAAATATCAAGGC-GTGAATAT-A-AA-CCTGAGAATGAAAAACAGG 1306
|||||||||| ||||||||||||||| | |||||| | || ||||||| |||||||||||
Sbjct 996 CGGTCACCGTGTAGAAATATCAAGGCCG-GAATATTATAAACCTGAGATTGAAAAACAGG 1054
Query 1307 TTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGAGATCTTATGAAG 1366
| |||||| ||| ||||||||||||||| ||||||||| | |||| |||||||||||||
Sbjct 1055 TATATGAAAAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTAGATCTTATGAAG 1114
Query 1367 AGTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATGGAAG 1426
|||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1115 AGTCACCAAACGAGGTGTATAAATTTAGCCTCACTGATTTGGAAGAAGAGATAATGGAAA 1174
Query 1427 ATGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGAA-A--TCCGGTC 1483
|||| | ||| |||| ||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 1175 ATGACTCCATAGAAGGTGTGAAGTGTAGAATGTTGGATGAAATAATGAAGAAGTCCGGTC 1234
Query 1484 ACCGTTTAGAAATATCAAG-CCGGGAATATAAACCTGAGATTGAAAAACAGGTCA-ATGA 1541
||| |||| |||||||||| |||| |||||||||||||||||||||||||||| | ||||
Sbjct 1235 ACCATTTAAAAATATCAAGGCCGG-AATATAAACCTGAGATTGAAAAACAGGT-ATATGA 1292
Query 1542 AGAAAAAGAGAAGAAAGTAATGAAT--A--TG-G-ATATTAGATGTGCTGATCAGTCACC 1595
||| ||||||||||||||||| || | || | ||||||||||| ||| |||||||
Sbjct 1293 AGAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTATGAAGAGTCACC 1352
Query 1596 ATACGAGGTGTATAAAATTAGCCTCACCGATGTT-GAAGAAGAGAGAA-GCAAGGAAGAT 1653
| ||||||||| |||| |||||||||||||| || |||||||||| || | ||| | |||
Sbjct 1353 ACACGAGGTGTCTAAATTTAGCCTCACCGAT-TTCGAAGAAGAGATAATGGAAG-ATGAT 1410
Query 1654 -ACAT 1657
||||
Sbjct 1411 TACAT 1415
Score = 699 bits (378), Expect = 0.0
Identities = 562/645 (87%), Gaps = 35/645 (5%)
Strand=Plus/Plus
Query 1598 ACGAGGTGTATAAAATTAGCCTCACCGATGTTGAAGAAGAGAGAAGCAAGGAAGATACAT 1657
|||||||||| ||| |||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 1676 ACGAGGTGTACAAATTTAGCCTCACCGATATCAAAGAAGAGAGAAGCAATGAAGATACAT 1735
Query 1658 CAATGGAAGA-TGATTACATAGAAGATGG-TCAAGTGGGAAAAGATCAAAGAGTATTCAG 1715
|||||||||| || || ||||||||| || |||||| ||||||||||||||||| |||||
Sbjct 1736 CAATGGAAGATTG-TTGCATAGAAGA-GGCTCAAGTCGGAAAAGATCAAAGAGTCTTCAG 1793
Query 1716 ATTCCGAAAAAGTAGTGAAGAGAAGAGAAAA--C-CATCATCACCATTATCAACACTAAT 1772
|||| || ||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 1794 ATTCAGAGAAAGTAGTGAAGAGAAGAGAAAATCCTCATCATCACCATTATCACCACTAAC 1853
Query 1773 GGAGTTTAGGAATACGGAGAGTTTGACGTATTACATGAGGCAAACAA-GGACT-CATCAA 1830
||||||||| ||| ||||||||||||||||||||||||||||| || ||| | |||| |
Sbjct 1854 AGAGTTTAGGGATATGGAGAGTTTGACGTATTACATGAGGCAAA-AAGGGA-TGCATCGA 1911
Query 1831 AGAAGAAGAAGATCATCAACATCACCACATTGTCGCCATTGTGTAGAATACAATGAGTTC 1890
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1912 AGAAGAAGAAGATCATCAACATCACCACATTGTTGCCATAATGTAGTATACAATGAGTTT 1971
Query 1891 AAAGTgaagaaggaagaagaagaagaagaagaagaagaaagaCAAAGCTTAAAAACCAAG 1950
||||||| ||||||||||||||| | |||||| | || ||||| |||| ||||||
Sbjct 1972 AAAGTGACGAAGGAAGAAGAAGA-G--GAAGAA-A-GA----CAAAGATTAACAACCAA- 2021
Query 1951 AA-TGTTCATTCGAAGCTTCATGAGTACGAA-AAGTTTTTAACTCAGTTTAAAAAGAAGA 2008
| ||||||||| ||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 2022 ACGTGTTCATTCTAAGCTTCATGAATACGAACAA-TTTTTAACTCAGTTTAAAAAGAAGA 2080
Query 2009 AGGAAGCAGAAAACGAGAGACGAAGATTATTC-CCCAAAGGCTTTGAGCCTACGCTTCCT 2067
|||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 2081 AGGAAGAAGAAAACGAGAGACGAAGATTAT-CACCCAAAGACTTTGAGCCTACGCTTCCT 2139
Query 2068 GATTACGACGAAGTTATTACTCGGTTTAGAGCGCTGGAGGCAC-AAGAAGAAGAAAGAC- 2125
||||||||| |||| |||||||| ||||||| ||||||| | |||||||||||||||
Sbjct 2140 GATTACGACCAAGTGATTACTCGCTTTAGAGTGCTGGAGA-AGGAAGAAGAAGAAAGACG 2198
Query 2126 AACGATTAGCAGCAACAAAACATATTCATCCTAACCTTCCTGATTACGACCAAATTGTTA 2185
|| |||||||| | |||||||| |||||||||| ||||||||||||||||| |||| ||
Sbjct 2199 AA-GATTAGCA--A-CAAAACATGTTCATCCTAAGCTTCCTGATTACGACCAGATTGCTA 2254
Query 2186 CTCAGTTTAAAGCGC-TAAAGGAAGAAGAAAAACAAGGACAAAGA 2229
|| |||||||| | | | ||||| | ||||||| || ||| ||||
Sbjct 2255 CTAAGTTTAAA-CTCCTGAAGGAGGTAGAAAAAGAAAGACGAAGA 2298
Score = 582 bits (315), Expect = 4e-165
Identities = 536/640 (84%), Gaps = 26/640 (4%)
Strand=Plus/Plus
Query 1 ATGTTTGGTTTCTTGCTCTGTCGACGGAAG-AAAGCAAAAGCTTTCACATGGAAAGTGTT 59
||||||||||||| | ||| ||||||| || ||| |||| ||||||||||||||||| ||
Sbjct 1 ATGTTTGGTTTCTCGTTCTCTCGACGG-AGAAAATCAAACGCTTTCACATGGAAAGTTTT 59
Query 60 G-AAGATGCTTCAATCTCGTCTTCTGCTACTCAA-ACACCAAAAGTATGCAAAAGCTAGA 117
| || | |||||||||||| ||| |||||||||| | ||| ||||| |||||| |||||
Sbjct 60 GAAACA-GCTTCAATCTCGCCTTATGCTACTCAAGTC-CCAGAAGTACGCAAAATCTAGA 117
Query 118 CATATACGT-ATGGATATTGCTGACTACATCCGAAGCAATGAATCCACCAATGCACTCCT 176
|| ||||| | ||||||| ||||| |||||||||||| || |||| | ||||||| |
Sbjct 118 CACCTACGTGCT-GATATTGTTGACTTCATCCGAAGCAACGACTCCAAGAGTGCACTCTT 176
Query 177 CCGAACCGAACAGCTCTTCCTCGTCGAAAACTCGATTTCAATCTACGATTTGTTGCTTAA 236
|||||||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||| ||
Sbjct 177 CCGAACCGAACAGCTCTTGCTCGTCGAAAACGCGATTACAATCTACGGTTTTTTGCTCAA 236
Query 237 GTTCACAGATTTCATAATCCGACGCTTCTCCCCAATTCGAAAACAC-G--GAGAACTGGT 293
|||||| |||||||| ||| ||||||||||| | | ||||||| | | | ||||
Sbjct 237 GTTCACTGATTTCATCCTCCTCCGCTTCTCCCCCAGTAAAAAACACAGTTGTTTATTGGT 296
Query 294 TAATGACGATACTTCGGAAGCAGTTTCGACTCTTATCTATGCATCGGTGAAGTGTAAAGA 353
|||||| |||||||| ||||||||||||| ||| || | ||||||||| ||||||| |||
Sbjct 297 TAATGATGATACTTCCGAAGCAGTTTCGAGTCTGATTTTTGCATCGGTCAAGTGTAGAGA 356
Query 354 TATACCTGAAATGCTTACTT-TAAGCGAGCTGGTTGGTCAACGTTATGGTCAACGTTATG 412
||||||||| ||| || || | |||||||||||||||||||||||||||||||||||||
Sbjct 357 AATACCTGAACTGC-TAATTATTAGCGAGCTGGTTGGTCAACGTTATGGTCAACGTTATG 415
Query 413 TAACAACTGCTATTCAGGTTC-TCCCTGGGAATCTTGTAAACACGGAGATCAAAAAGAAA 471
||||||||||||||||||| | |||| ||||||||||||||||| ||||||||| |||||
Sbjct 416 TAACAACTGCTATTCAGGTCCCTCCC-GGGAATCTTGTAAACACTGAGATCAAAGAGAAA 474
Query 472 TTGTCGAT-ATA-TTCAGTA-T--CCGAA-CATG-TGAAGTGTCGAATGGTGGAGGAAAT 524
||| | | | | ||||||| | ||||| | || | |||||| || | ||||||| ||
Sbjct 475 TTGAAG-TCA-ACTTCAGTAGTATCCGAAAC-TGAT-AAGTGTAGAGTAATGGAGGAGAT 530
Query 525 AGCCAAGGAATCGGGTTACCGTTTAGAAATACTAAGGCTGGAACATAAATCTGAGAATGA 584
||||||||| |||||||||||||||||||| ||| |||||| | |||||||||||| |||
Sbjct 531 AGCCAAGGAGTCGGGTTACCGTTTAGAAATTCTAGGGCTGGGATATAAATCTGAGATTGA 590
Query 585 AAACAAGGTATTTGACGTGAAAGAGAAGAAAGTAATGGAT 624
||| |||| |||||| || |||| ||||| |||||||||
Sbjct 591 CAACGAGGTTTTTGACTTGGAAGAAAAGAACGTAATGGAT 630
Score = 549 bits (297), Expect = 4e-155
Identities = 607/748 (81%), Gaps = 55/748 (7%)
Strand=Plus/Plus
Query 493 GAACATGTGAAGTGTCGAATGGTGGAGGAAATAGCCAAGGAA-TCGGGTTACCGTTTAGA 551
||| || |||||||| ||||| |||| || |||| || ||| || ||| ||||| ||||
Sbjct 952 GAAGATATGAAGTGTAGAATGTTGGATGATATAGTGAA-GAATTCCGGTCACCGTGTAGA 1010
Query 552 AATACT-AAGGCTGG-A-A-CATAAATCTGAGAATG-AAAACAAGGTATTTGACGTGAAA 606
|||| | ||||| || | | ||||| |||||| || ||||| |||||| ||| | ||
Sbjct 1011 AATA-TCAAGGCCGGAATATTATAAACCTGAGATTGAAAAAC-AGGTATATGAAAAGGAA 1068
Query 607 GAGAAGAAAGTAATGGATTTGGATAAAGAAGA-GAGAAGC--AAGAAAGAGTCACCACAG 663
|||||||||||||||||| |||| | | | || | | | | ||||||||||| |
Sbjct 1069 GAGAAGAAAGTAATGGATCCGGAT-ATCTATATTAG-ATCTTATG-AAGAGTCACCAAAC 1125
Query 664 GAGGTGTATAAATTTATCCTCACCGATGTCAAAGACGAGAGAAGCAAGAAAGAGACATCA 723
|||||||||||||||| |||||| ||| | | | ||| ||||| || |
Sbjct 1126 GAGGTGTATAAATTTAGCCTCACTGAT-T----------TG--G-AAG-AAGAG--AT-A 1167
Query 724 AT-GAAAGATGATTACATAGAAGATGTGATGAAGTCTAGATTGTTGGCTGAAA-AAGCGA 781
|| |||| |||| | |||||||| ||| |||||| |||| |||||| ||||| || ||
Sbjct 1168 ATGGAAA-ATGACTCCATAGAAG--GTG-TGAAGTGTAGAATGTTGGATGAAATAA-TGA 1222
Query 782 AGAAGTCAGGTCACCGTTTAGAAATATTAAGGCCGGAATATAAACCTGAGATTGAAAATC 841
||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 1223 AGAAGTCCGGTCACCATTTAAAAATATCAAGGCCGGAATATAAACCTGAGATTGAAAAAC 1282
Query 842 AGGTTTATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATATGGATATTACATCTTATG 901
|||| |||||||||||||||||||||||||| ||||| ||| ||||||||| || |||||
Sbjct 1283 AGGTATATGAAGAGGAAGAGAAGAAAGTAATGGATCCAGATGTGGATATTAGATGTTATG 1342
Query 902 AAGAGCCACCACACGAGGTGTATAAATTTAGCATCACCAATTTCGAAGAAGGGATAATGG 961
||||| ||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||
Sbjct 1343 AAGAGTCACCACACGAGGTGTCTAAATTTAGCCTCACCGATTTCGAAGAAGAGATAATGG 1402
Query 962 AAGATGATTACGTAGAAGATGTGAAGTGTAGAACGTTGGATGAAATAATGAAGAAATCCG 1021
||||||||||| |||||| | |||||||||||| ||||||||| ||| ||||||| ||||
Sbjct 1403 AAGATGATTACATAGAAGCTTTGAAGTGTAGAATGTTGGATGATATATTGAAGAAGTCCG 1462
Query 1022 GTCACCGTTTAGAAATATCAAAGCGG-AA-ATA-TAAACCTGAGAATGAAAAACAGGTTT 1078
||||||||||||||||||||| |||| || ||| ||||||||||| ||||| ||||||
Sbjct 1463 GTCACCGTTTAGAAATATCAAGGCGGCAATATAATAAACCTGAGATTGAAATACAGGTCA 1522
Query 1079 ATGAAGAGGAAGAGAAGAAAGTAATTGATCCGGATGTGGATATTAGATCTTATGAAGAGT 1138
||||| ||||||||||||||||||| || ||||| |||||||||||| | |||| ||||
Sbjct 1523 ATGAAAAGGAAGAGAAGAAAGTAATCAATACGGATATGGATATTAGATATGATGATGAGT 1582
Query 1139 CACCACACGAGGTGTATA-A-ATT-TAGCCTCACCGATT-TCGAAGAAGAGATAATGGAA 1194
||||| | |||||| | | | ||| ||| ||||| ||| | |||||||||| || | ||
Sbjct 1583 CACCAGAAGAGGTGGAGACATATTCTAGTCTCACGGATGAT-GAAGAAGAGAGAA-GCAA 1640
Query 1195 G-ATGATTACAT-A--G-AAGATGTGAA 1217
| | ||| |||| | | ||||||||||
Sbjct 1641 GGAAGAT-ACATCAATGGAAGATGTGAA 1667
Score = 496 bits (268), Expect = 5e-139
Identities = 456/540 (84%), Gaps = 40/540 (7%)
Strand=Plus/Plus
Query 1135 GAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGA--TT--T------CG-AAG-AA 1182
||||||| ||||||||||||||||||| |||||||||| || | | ||| ||
Sbjct 631 GAGTCACTACACGAGGTGTATAAATTTTGCCTCACCGATGTTGATGAGAGAAGCAAGAAA 690
Query 1183 GAG--AT-AATGGAAGATGATTACATAGAAGATGTGAAG--T-GTAGAATGTTGGATG-A 1235
||| || |||| ||||||||||||||||| || |||| | |||| |||||| || |
Sbjct 691 GAGACATCAATGAAAGATGATTACATAGAACATAAGAAGTCTACTAGATTGTTGGCTGAA 750
Query 1236 AATAACGAAGAAGTCCGGTCACCGTTTAGAAATATCAAGG-CGTGAATATAAACCTGAGA 1294
||| ||||||||||||||||| |||||||||||| |||| || |||| |||||||||||
Sbjct 751 AAT-GCGAAGAAGTCCGGTCACAGTTTAGAAATATTAAGGCCG-GAATCTAAACCTGAGA 808
Query 1295 ATGAAAAACAGGTTTATGAAGAGGTAGAGAAGAAAGTAATTGATCCGGATGTGGATATGA 1354
||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||| |
Sbjct 809 CTGAAAAAGAGGTCAATGAAGAGGAAGAGAAGAGAGTAATGGATCCGGATGTGGATATTA 868
Query 1355 GATCTTATGAAGAGTCACCACACAAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 1414
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 869 GTTGTTATGAAGAGTCACCACACGAGGTGTATAAATTTAGCCTCACCGATTTCGAAGAAG 928
Query 1415 AGATAATGGAAGATGATTACATCGAAGATGTGAAGTGTAGATTGTTGGATGAAATAATGA 1474
||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||| |||
Sbjct 929 AGATAATGGAAGATGATTACAGAGAAGATATGAAGTGTAGAATGTTGGATGATATAGTGA 988
Query 1475 A-A-T-CCGGTCACCGTTTAGAAATATCAAG-CCGGGA-AT-ATAAACCTGAGATTGAAA 1528
| | | ||||||||||| ||||||||||||| |||| | || ||||||||||||||||||
Sbjct 989 AGAATTCCGGTCACCGTGTAGAAATATCAAGGCCGGAATATTATAAACCTGAGATTGAAA 1048
Query 1529 AACAGGTCA-ATGAAGAAA-AAGAGAAGAAAGTAATG-A-----ATATGGATATTAGATG 1580
||||||| | ||||| || ||||||||||||||||| | |||| |||||||||
Sbjct 1049 AACAGGT-ATATGAA-AAGGAAGAGAAGAAAGTAATGGATCCGGATATCTATATTAGATC 1106
Query 1581 TGCTGATCAGTCACCATACGAGGTGTATAAAATTAGCCTCACCGATGTTG-AAGAAGAGA 1639
| ||| |||||||| |||||||||||||| |||||||||| ||| ||| |||||||||
Sbjct 1107 TTATGAAGAGTCACCAAACGAGGTGTATAAATTTAGCCTCACTGAT-TTGGAAGAAGAGA 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111344808810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5