BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914352

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   313    5e-85


> AT1G51920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; 
EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 
proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr1:19294229-19294579 FORWARD LENGTH=237
Length=237

 Score =  313 bits (169),  Expect = 5e-85
 Identities = 201/216 (93%), Gaps = 3/216 (1%)
 Strand=Plus/Plus

Query  5    CGTTTCACAGTGGAAAATCCATCTTTTTGAAGATCTTCGTCTTCG-CTCTGCTACTTCTT  63
            ||||||||||||||||||||||||| |||||| |||| ||||| |  |||||||||| ||
Sbjct  8    CGTTTCACAGTGGAAAATCCATCTTCTTGAAGCTCTTTGTCTT-GTTTCTGCTACTTGTT  66

Query  64   CTTCCCTTGTCACAAAGCAACGCTACTCGTATCCCAAGAGCTCCAATTAGCTCGAGAAGA  123
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  67   CTTCCCTTGTCTCAAAGCAACGCTACTCGTATCCCAAGAGCTCCTATTAGCTCGAGAAGA  126

Query  124  CCAATTTGCCCGGCTTGTGTGTGTTGTGAGCCAGCTCCACCAGGAAGTTGCTGCAGATGT  183
            || |||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  127  CCGATTTGCCCTGCTTGTGTGTGTTGTGAGCCAGCTCCGCTAGGAAGTTGCTGCAGATGT  186

Query  184  TGTGCATCTCCTATTGTCACTCAAACTCAATCTCCA  219
            ||||||||||||||||||||||||||||| || |||
Sbjct  187  TGTGCATCTCCTATTGTCACTCAAACTCA-TCACCA  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9953014302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5