BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914363
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52000.1 | Symbols: | Mannose-binding lectin superfamily pr... 1286 0.0
AT1G52040.1 | Symbols: MBP1, ATMBP | myrosinase-binding protein... 850 0.0
AT1G52030.2 | Symbols: MBP2, MBP1.2, F-ATMBP | myrosinase-bindi... 460 8e-129
> AT1G52000.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19333159-19336115 REVERSE LENGTH=2451
Length=2451
Score = 1286 bits (696), Expect = 0.0
Identities = 835/903 (92%), Gaps = 6/903 (1%)
Strand=Plus/Plus
Query 61 AAGTTGGAAGCACAAGGAGGCAAAGAAGGAAATCAATGGGACGACGGAGCTGATCATGAT 120
||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||
Sbjct 1359 AAGTTGGAAGCACAAGGAGGCAATGGAGGAAATCAATGGGACGACGGAACCGATCATGAT 1418
Query 121 GGTGTTATGAAGATACATGTTGCAGCTGGTGGTCTAGGAATTGAAC-AATGTAGATTTGA 179
||||| ||||||||||||||||||| |||||||||||||||||| | ||| |||||||||
Sbjct 1419 GGTGTGATGAAGATACATGTTGCAGTTGGTGGTCTAGGAATTGAGCAAAT-TAGATTTGA 1477
Query 180 TTATGTCAAGAACGGACAGTCAAAGGAAGGACCCTTCCACGGTGTCAAAGGAAGAGGTGG 239
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TTATGTCAAGAACGGACAGTTGAAGGAAGGACCCTTCCACGGTGTCAAAGGAAGAGGTGG 1537
Query 240 CAGTTCAACGTTTGTGATCAATCATCCCGAAGAGTATCTTGTTTCCGTC-AAGGGTTGGT 298
|| ||||||| ||| ||| | ||||| || |||||||||||||||||| | ||||| ||
Sbjct 1538 CACTTCAACGATTGAGATTAGCCATCCGGACGAGTATCTTGTTTCCGTCGAGGGGTT-GT 1596
Query 299 ACGACTCTTCCAATATCATTCAAGGAATTCAGTTTAAATCCAACAAACACACTTCTCAGT 358
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1597 ACGACTCTTCCAATATCATTCAAGGAATCCAGTTTCAATCCAACAAACACACTTCTCAGT 1656
Query 359 ACTTTGGATATGTATATTCTGGAGATGGTAAACAATTTTCACTTCAAGTTGATGACAAGA 418
|||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||| ||||
Sbjct 1657 ACTTTGGATATGAATATTATGGAGATGGTACACAATTTTCACTTCAAGTTAATGAAAAGA 1716
Query 419 AGATCATTGGTTTCCATGGTTTTGCCGACTCGCACCTTAATTCTCTTGGCGCTTATTTCG 478
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1717 AGATCATTGGTTTCCATGGTTTTGCCGACTCACACCTTAATTCTCTTGGAGCTTATTTCG 1776
Query 479 TTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGTTAAAGCTCAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTCCAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGTTAAAGCTCAAG 1836
Query 539 GAGGAAATTATGGAGAAACCTTTGATGATGGTGCTTTCGATCATGTAAGAAAGGTTTATG 598
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1837 GAGGAAGTTATGGAGAAACATTTGACGATGGTGCTTTCGATCATGTAAGAAAGGTTTATG 1896
Query 599 TTGGTCAAGGTGATTCCGGTGTAGCTTATGTCAAGTTCGATTATGAGAAAGACGGGAAAA 658
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1897 TTGGTCAAGGTGATTCTGGTGTAGCTTATGTCAAGTTCGATTATGAAAAAGACGGTAAAA 1956
Query 659 TAG-AGACACGTGAGCATGGACAAATGACATTGTTAGCTACAGAGGAGTTTGAGGTTGAT 717
|| |||||| || |||||| |||||||||||| || |||||||||||||||||||||
Sbjct 1957 -AGGAGACACAAGAACATGGAAAAATGACATTGTCAGGAACAGAGGAGTTTGAGGTTGAT 2015
Query 718 TTAGATGATTTCATAACATCAATGGAAGTCTATGTCGACAAAGTCTACGGTTATAAAAGC 777
| ||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2016 TCAGACGATTACATAACATCAATGGAGGTTTATGTCGACAAAGTCTACGGTTATAAAAGC 2075
Query 778 GAAACCGTCGTTGCTCTTACCTTCAAAACCTTTAAGGGCAAAACCTCACCGCGTTTTGGA 837
|||| |||| |||||||||||||||| ||||||||||| |||| || || |||||||||
Sbjct 2076 GAAATCGTCATTGCTCTTACCTTCAAGACCTTTAAGGGTGAAACTTCTCCACGTTTTGGA 2135
Query 838 GTAGAGACTGAGAATAAGTATGAAGTTAAAGATGGTAAAGGAGGAAAACTTTCTGGTTTC 897
|||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2136 ATAGAGACTGAGAATAAATATGAAGTTAAAGACGGTAAAGGAGGAAAACTTGCTGGTTTC 2195
Query 898 CATGGAAAAGCTAGTGATGTTCTTTATGCTCTTGGTGCTTATTTCGCTCCAACAGCAAAT 957
|||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 2196 CATGGAAAAGCTAGCGATGTTCTTTATGCTATTGGTGCTTATTTCATTCCAGCAGCAAAT 2255
Query 958 TAG 960
|||
Sbjct 2256 TAG 2258
> AT1G52040.1 | Symbols: MBP1, ATMBP | myrosinase-binding protein
1 | chr1:19350375-19352782 REVERSE LENGTH=1681
Length=1681
Score = 850 bits (460), Expect = 0.0
Identities = 751/890 (84%), Gaps = 25/890 (3%)
Strand=Plus/Plus
Query 67 GAAGCACAAGGAGGCAAAGAAGG-AAATCAATGGGACGACGGAGCTGATCATGATGGTGT 125
|||||||||||||| |||||||| ||| ||||||| || ||||| || || ||||||||
Sbjct 100 GAAGCACAAGGAGGAAAAGAAGGCAAA-GAATGGGATGATGGAGCCGAACACGATGGTGT 158
Query 126 TATGAAGATACATGTTGCAGCTGGTGGTCTAGGAATTGAAC-AATGTAGATTTGATTATG 184
| ||||||| | || |||||||||||||| |||||||||| ||| ||||| |||||||
Sbjct 159 GACGAAGATATACGTAGCAGCTGGTGGTCTTGGAATTGAACAAAT-CAGATTCGATTATG 217
Query 185 TCAAGAACGGACAGTCAAAGGAAGGACCCTTCCACGGTGTCAAAGGAAGAGGTGGC-AGT 243
| ||||||||||| ||||||||||| | || || ||||| || || ||| || | | |
Sbjct 218 TAAAGAACGGACAACCAAAGGAAGGATCTTTTCATGGTGTGAAGGGTAGAAGT-ACTATT 276
Query 244 TCAACGTTTGTGATCAATCATCCCGAAGAGTATCTTGTTTCCGTCAAGGGTTGGTACGAC 303
|| ||| ||| ||| | ||||| | ||||||||| ||||| | ||||||||||||||
Sbjct 277 TCTACGATTGAGATTAGCCATCCAGCCGAGTATCTTATTTCCATGGAGGGTTGGTACGAC 336
Query 304 TCTTCCAATATCATTCAAGGAATTCAGTTTAAATCCAACAAACACACTTCTCAGTACTTT 363
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 337 TCTACCAATATCATTCAAGGAATTCAGTTTAAATCCAACAAACACACTTCCCAGTACTTT 396
Query 364 GGATATGTATATTCT-GGAGATGGTAAACAATTTTCACTTCAAGTTGATGACAAGAAGAT 422
||||||| || || | |||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 397 GGATATGAAT-TTTTGGGAGATGGTACACAATTTTCACTTCAAGTTAATGACAACAAGAT 455
Query 423 CATT-GGTTTCCATGGTTTTGCCGACTCGCACCTTAATTCTCTTGGCGCTTATTTCGTTC 481
|||| | ||| ||||| ||||| || || || || |||||| |||| || || || ||
Sbjct 456 CATTAGCTTT-CATGGGTTTGCTGATTCTCATCTCAATTCTGTTGGGGCGTA-TT--TTG 511
Query 482 CAATCTCATCCTCTTCTTCCTCCTTGACTCCTCCTCCCAACAAAGTTAAAGCTCAAGGAG 541
| | | | | || ||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 512 C-A-C-C--CATC-TCTTCCTCCTTGACTACTACTCCCAACAAAGTGGAAGCTCAAGGAG 565
Query 542 GAAATTATGGAGAAACCTTTGATGATGGTGCTTTCGATCATGTAAGAAAGGTTTATGTTG 601
||||| ||||||||| || || ||||||| ||| |||||||||||||||||||||||||
Sbjct 566 GAAATGGTGGAGAAACATTCGACGATGGTGTTTTTGATCATGTAAGAAAGGTTTATGTTG 625
Query 602 GTCAAGGTGATTCCGGTGTAGCTTATGTCAAGTTCGATTATGAGAAAGACGGGAAAATAG 661
|||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| ||
Sbjct 626 GTCAAGGTGAGTCCGGTGTAGCTTATGTCAAATTCGAATATGAGAAAGATGGGAAAAGAG 685
Query 662 AGACACGTGAGCATGG-ACAAATGACATTGTTAGCTACAGAGGAGTTTGAGGTTGATTTA 720
| ||| | || ||||| | ||||||||||||||| |||||||||||||||||||||| |
Sbjct 686 AAACAAGAGACCATGGGA-AAATGACATTGTTAGGAACAGAGGAGTTTGAGGTTGATTCA 744
Query 721 GATGATTTCATAACATCAATGGAAGTCTATGTCGACAAAGTCTACGGTTATAAAAGCGAA 780
||||||| ||| |||||||| ||||| | |||||||||||||| |||||||| ||||||
Sbjct 745 GATGATTACATCACATCAATTGAAGTTTCTGTCGACAAAGTCTTTGGTTATAACAGCGAA 804
Query 781 ACCGTCGTTGCTCTTACCTTCAAAACCTT-TAAGGGCAAAACCTCACCGCGTTTTGGAGT 839
| |||| ||||||| ||||| || | |||||| | ||||||||||| ||||||| |
Sbjct 805 ATCGTCACTGCTCTTGTGTTCAAGAC-TAGTAAGGGTACAACCTCACCGCCTTTTGGAAT 863
Query 840 AGAGACTGAGAATAAGTAT-GAAGTTAAAGATGGTAAAGGAGGAAAACTTTCTGGTTTCC 898
| ||||||||| || | | ||| ||||||||||||| |||||||||||| | || ||||
Sbjct 864 GGTGACTGAGAAGAAAT-TCGAACTTAAAGATGGTAACGGAGGAAAACTTGCCGGATTCC 922
Query 899 ATGGAAAAGCTAGTGATGTTCTTTATGCTCTTGGTGCTTATTTCGCTCCA 948
|||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 923 ATGGGAAAGCTAGTGATGTTCTTTATGCTCTTGGTGCCTATTTCGCTCCA 972
> AT1G52030.2 | Symbols: MBP2, MBP1.2, F-ATMBP | myrosinase-binding
protein 2 | chr1:19345940-19348668 REVERSE LENGTH=2465
Length=2465
Score = 460 bits (249), Expect = 8e-129
Identities = 388/454 (85%), Gaps = 14/454 (3%)
Strand=Plus/Plus
Query 512 CTCCTCCCAACAAAGTTAAAGCTCAAGGAGGAAATTATGGAGA-AACCTTTGATGATGGT 570
||||||| |||||||| |||||| |||||||||| |||| | || ||||| ||||||
Sbjct 1381 CTCCTCCTAACAAAGTGGAAGCTCTAGGAGGAAATGGTGGA-ACAATATTTGACGATGGT 1439
Query 571 GCTTTCGATCATGTAAGAAAGGTTTATGTTGGTCAAGGTGATTCCGGTGTAGCTTATGTC 630
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1440 GCTTTCGATCATGTAAGAAAGGTTTATATTGGTCAAGGTGATTCTGGTGTAGCTTATGTG 1499
Query 631 AAGTTCGATTATGAGAAA-GACGGGAAAATAGAGACACGTGAGCATGGACAAATGACATT 689
|||||||| || ||||| || ||||||| ||||||||| ||||||||| |||||||| |
Sbjct 1500 AAGTTCGAATAC-AGAAAAGATGGGAAAAGAGAGACACGGGAGCATGGAAAAATGACAGT 1558
Query 690 GTTAGCTACAGAGGAGTTTGAGGTTGATT-TAGATGATTTCATAACATCAATGGAAGTCT 748
||||| |||||||||||||||||||| | | ||||||| ||| |||||||| ||||| |
Sbjct 1559 GTTAGGAACAGAGGAGTTTGAGGTTGAGTCT-GATGATTACATCACATCAATTGAAGTTT 1617
Query 749 ATGTCGACAAAGTCTACGGTTATAAAAGCGAAACCGTCG-TTGCTCTTACCTTCAAAACC 807
||||||||| |||| |||| ||| || |||| |||| || ||||| |||||| |||
Sbjct 1618 CTGTCGACAATGTCTTTGGTTTTAAGAGTGAAATCGTCACTT-CTCTTGTCTTCAAGACC 1676
Query 808 TTTAAGGGCAA-AACCTCACCGCGTTTTGGAGTAGAGACTGAGAATAAGTATG-AAGTTA 865
|||||||| || |||||||| | ||||||| | ||||||||||| || | || || |||
Sbjct 1677 TTTAAGGG-AATAACCTCACAACCTTTTGGAATGGAGACTGAGAAGAAAT-TGGAACTTA 1734
Query 866 AAGATGGTAAAGGAGGAAAACTTTCTGGT-TTCCATGGAAAAGCTAGTGATGTTCTTTAT 924
|||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 1735 AAGACGGTAAAGGAGGAAAACTTG-TGGGATTCCATGGGAAAGCTAGTGATGTTCTTTAT 1793
Query 925 GCTCTTGGTGCTTATTTCGCTCCAACAGCAAATT 958
|||||||| |||||||||||||||||| ||||||
Sbjct 1794 GCTCTTGGCGCTTATTTCGCTCCAACAACAAATT 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5