BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914379
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52180.1 | Symbols: | Aquaporin-like superfamily protein | ... 353 1e-96
AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast... 156 3e-37
> AT1G52180.1 | Symbols: | Aquaporin-like superfamily protein
| chr1:19424944-19425928 REVERSE LENGTH=375
Length=375
Score = 353 bits (191), Expect = 1e-96
Identities = 234/255 (92%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 369 CCACAACGTTGCGGCTGGAGTAGGAACAGCACAAGGAGTAGTAATGGAGATCATAATCAC 428
||||| |||||||| | |||||||| || ||||| ||||||| |||||||||||||||||
Sbjct 120 CCACAGCGTTGCGGTTAGAGTAGGATCAACACAAAGAGTAGTGATGGAGATCATAATCAC 179
Query 429 ATTCGCATTGGTCTACACCGTTTACGCCACAGCCATTGACTCCAACAATGGCACTCTCGG 488
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTCGCATTGGTCTACACTGTTTACGCCACAGCCATTGACTCCAACAATGGCACTCTCGG 239
Query 489 AACCATCGCTCCACTTGCTATCGGACTCATCGTTGGTGCTAACATTCTTGCAGCCGGTCC 548
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 240 AACCATCGCTCCACTTGCTATCAGACTCATCGTTGGTGCTAACATTCTTGCAGCCGGCCC 299
Query 549 GTTCTCTGGCGGTTCCA-TGAACCCTGCTCGTTCCTTTGGACCAGCTCTTGCGGTTGGAG 607
|||||||| ||| ||| ||||||||| ||||| |||||| || ||||||| ||||||
Sbjct 300 ATTCTCTGGTGGT-CCAATGAACCCTGGACGTTCTTTTGGATCATCTCTTGCCGTTGGAA 358
Query 608 ATTTTTCAGGACATT 622
|||||||||||||||
Sbjct 359 ATTTTTCAGGACATT 373
> AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast
intrinsic protein 2;3 | chr5:19248249-19249504 REVERSE LENGTH=1051
Length=1051
Score = 156 bits (84), Expect = 3e-37
Identities = 377/513 (73%), Gaps = 42/513 (8%)
Strand=Plus/Plus
Query 178 GTTTCGATTGCAGCTAACCA-CTCCGGTGGCCATGTTAACCCAGCCGTTACTTTTGGCCT 236
||||| ||||| ||||| || || ||||| || ||||||||||||| ||| |||||||
Sbjct 249 GTTTCCATTGCGGCTAA-CATTTCTGGTGGTCACCTTAACCCAGCCGTGACTCTTGGCCT 307
Query 237 TGTTGTTGGCGGAAA-AGTCACAATCATCACCGGAGTT-TTCTATTGGATTGCTCAGCT- 293
|| | |||||||| | | ||| ||||||| || || |||||||||||||||||| |
Sbjct 308 TGCCATCGGCGGAAACA-TAACACTCATCACAGG-TTTCTTCTATTGGATTGCTCAG-TG 364
Query 294 TCTCGGGTCCACCGTAGCTTG-CTTCCTTCTCAAATTTGTCACCGGTGGTTTGGTATG-G 351
||| || |||| ||| ||||| ||| || ||| ||||| | | | ||| | | |
Sbjct 365 TCTTGGCTCCATCGTCGCTTGTCTT-CTCCTCGTCTTTGTTA-C--T--AATGGCAAGAG 418
Query 352 CGATTCCAATCCACAGA-CCACAACGT-TGCGGCTGGAGTAGGAACAGCAC-AAGGAGTA 408
|| | | | | || |||| || | | || || ||||| | | | |||| ||
Sbjct 419 CG--T---A--C-C-GACCCACGGGGTCT-CAGCCGGTCTAGGAGC-GGTCGAAGGTGTC 467
Query 409 GTAATGGAGATCATAATCACATTCGCATTGGTCTACACCGTTTACGCCACAGCCAT-TGA 467
|| ||||||||| | | || || ||||||||||||||||||||||||||||| | |||
Sbjct 468 GTCATGGAGATCGTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACAGC-AGCTGA 526
Query 468 CTCCAAC-AATGGCA-CTCTCGGAACCATCGCTCCACTTGCTATCGGACT-CATCGTTGG 524
||||| || || | | || || |||||||||||| | || ||||| || ||| |||||
Sbjct 527 -TCCAAAGAAAGG-ATCGCTAGGGACCATCGCTCCAATCGCCATCGG-CTTCATAGTTGG 583
Query 525 TGCTAACATTCTTGCAGCCGGTCCGTTCTCTGGCGGTTCCATGAACCCTGCTCGTTCCTT 584
||| ||||| || || || ||||| ||| ||| || |||||||| || || | || ||
Sbjct 584 TGCCAACATCCTCGCTGCTGGTCCATTCAGTGGTGGCTCCATGAATCCAGCAAGGTCGTT 643
Query 585 TGGACCAGCTCTTG-CGGTTGGAGATTTTTCAGGACAT-TGGGTTTATTGGGTCGGTCCA 642
||||||||| ||| | || || || || || | || ||| | |||||||| || |||
Sbjct 644 CGGACCAGCTGTTGTCAGT-GGTGACTTGTCCCAA-ATCTGGATCTATTGGGTGGGACCA 701
Query 643 CTTGTTGGTGGGGGACTTGCCGGAGTTATCTAC 675
||||| ||||| | ||| || ||| ||||||||
Sbjct 702 CTTGTGGGTGGTGCACTCGCGGGACTTATCTAC 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5