BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914387
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family pro... 743 0.0
AT1G36020.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 158 1e-37
> AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:13089869-13097078 FORWARD LENGTH=4298
Length=4298
Score = 743 bits (402), Expect = 0.0
Identities = 627/725 (86%), Gaps = 58/725 (8%)
Strand=Plus/Plus
Query 48 AGAGATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGAAGAGTTCGATTGGGA 107
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 122 AGAAATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGA 181
Query 108 AGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACCTCCAATGCTTCTTCTTC-T- 165
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
Sbjct 182 AGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACCACAAACGCTTCTTCTTCTTC 241
Query 166 -T--T-CCATTTCACTCCTTTGGCTCATCCTCCAATTACAAG-AAATAGCACTAAGCCTC 220
| | ||||||||||||||||||| |||| |||||||| | |||| ||||||||| |
Sbjct 242 GTCATCCCATTTCACTCCTTTGGCTAATCCACCAATTAC-GGCAAATCTCACTAAGCCAC 300
Query 221 CTGTGAAAAGACAATCTACTCTCGATAAATTCATCAGAAGAACCGAGCATAAACCGGAG- 279
||| ||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 301 CTGCGAAGAGACAATCTACTCTCGATAAATTCATCGGCAGAACCGAACATAAACCGGAGA 360
Query 280 A--ATCAAGTTGTTTCCGAGTCGAATTTTGATGAATTTGAGTGTGGTGGTGGTAACGATA 337
| |||||||||||| | || | | || || |||| | | ||||||||
Sbjct 361 ATCATCAAGTTGTTT-C----CG-A----G-TG----TG-GTGT--TAACGATAACGATA 402
Query 338 AGAGTCCTATAGTTGGTATTGATCCTGAGGCAGCTAAAACTTGGATTTATCCAGTGAATG 397
| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 403 ATAGTCCTTTAGTTGGGATTGATCCTGAGGCAGCTAAAACTTGGATTTATCCAG-G--T- 458
Query 398 GGAGTGTTCCTCTT-AGAGATTATCAGTTTGCTATAACGAATACCGCTTTGTTTTCGAAT 456
||||||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 459 --TTTGTTCCT-TTAAGAGATTATCAGTTTGCTATAACGAAGACTGCTTTGTTTTCGAAT 515
Query 457 ACATTGGTGGCTTTGCCTACGGGACTTGGTAAAACGCTTATAGCTGCAGTTGTTATGTAT 516
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 516 ACATTGGTGGCTTTGCCTACGGGACTTGGTAAAACGCTTATAGCTGCGGTTGTTATGTAT 575
Query 517 AATTACTTCAGATTGTTTCCAGAAGGTAAAATTGTATTTGCGGCACCGTCTAGGCCTCTT 576
||||||||||||| ||||||| |||||||||| ||||||||||| || ||||||||||||
Sbjct 576 AATTACTTCAGATGGTTTCCACAAGGTAAAATAGTATTTGCGGCGCCTTCTAGGCCTCTT 635
Query 577 GTGATGCAGCAGATTGAGGCGTGTCATAATATTGTTGGAATACCTCGAACTTTTAGATAT 636
|||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 636 GTGATGCAGCAGATTGAGGCGTGTCATAATATTGTTGGAATACC---A-C----A-A--- 683
Query 637 ATTTTTGAGAAATGGACTATTGACTTGACGGGTCAGACATGCCCTTCGAAAAGAGCCTTC 696
|| | ||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 684 ------GA-A--TGGACGATTGACTTGACGGGTCAGACATGTCCTTCGAAAAGAGCTTTT 734
Query 697 TTGTGGAAAAGCAAACGGGTTTTCTTTGTCACTTCACAAGTGTTAGAGAAGGATATACAG 756
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 735 TTGTGGAAAAGCAAACGGGTTTTCTTTGTCACTCCACAAGTGTTAGAGAAGGATATACAG 794
Query 757 TCAGG 761
|||||
Sbjct 795 TCAGG 799
> AT1G36020.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1);
Has 18 Blast hits to 18 proteins in 5 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:13433919-13434340 REVERSE LENGTH=351
Length=351
Score = 158 bits (85), Expect = 1e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 51 GATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGAAGAGTTCGATTGGGAAGC 110
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 30 GATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGAAGC 89
Query 111 AGCAGTCAAAGAAATCGACTTGGCTTGTCTTAAAACC 147
|||||||||||||||||||||||||||||| ||||||
Sbjct 90 AGCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACC 126
Score = 126 bits (68), Expect = 3e-28
Identities = 168/211 (80%), Gaps = 27/211 (13%)
Strand=Plus/Plus
Query 184 GCTCATCCTCCAATTACAAG-AAATAGCACTAAGCCTCCTGTGAAAAGACAATCTACTCT 242
|||||||| |||||||| | |||| |||||| || |||| ||||||||||||||||||
Sbjct 133 GCTCATCCACCAATTAC-GGAAAATCTCACTAAACCACCTGCGAAAAGACAATCTACTCT 191
Query 243 CGATAAATTCATCAGAAGAACCGAGCATAAACCGGAGAATCAAGTTGTTTCCGAGTCGAA 302
||||||||||||| | |||||||| | |||||| |||| || | | | || ||
Sbjct 192 CGATAAATTCATCGGTAGAACCGAACCTAAACC--AGAA--AA-T-----C--A-TC-AA 237
Query 303 TTTTGATGAATT-TGAGTGTGGTGGTG--G-TAACGATAAGAGTCCTATAGTTG-GTATT 357
|| | | || ||||||||||||| | ||||||||| |||| | |||||| | |||
Sbjct 238 GTT-G-T---TTCTGAGTGTGGTGGTAATGATAACGATAATAGTCTTTTAGTTGAG-ATT 291
Query 358 GATCCTGAGGCAGCTAAAACTTGGATTTATC 388
|||||||||||||||||||||||||||||||
Sbjct 292 GATCCTGAGGCAGCTAAAACTTGGATTTATC 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5