BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914388
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39400.1 | Symbols: BRI1, CBB2, DWF2, BIN1, ATBRI1 | Leucine... 632 1e-180
> AT4G39400.1 | Symbols: BRI1, CBB2, DWF2, BIN1, ATBRI1 | Leucine-rich
receptor-like protein kinase family protein | chr4:18324661-18328826
FORWARD LENGTH=4166
Length=4166
Score = 632 bits (342), Expect = 1e-180
Identities = 472/531 (89%), Gaps = 23/531 (4%)
Strand=Plus/Plus
Query 267 CGGTACGGTTCCTCCTTTCTTCGGCTCTTGTTCACTTCTGGAATCACAT-GTGTTGTCGA 325
|||| |||||||||| |||||||| || ||||| ||||| ||||||| | | ||||||||
Sbjct 1152 CGGTGCGGTTCCTCCATTCTTCGGTTCATGTTCTCTTCTCGAATCAC-TCGCGTTGTCGA 1210
Query 326 GTAACAACTTCTCTGGCAAGTTACCAATGGATACGTTACTGAAGATGAGAGGTCTC-AAG 384
||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| |||
Sbjct 1211 GTAACAACTTCTCTGGCGAGTTACCGATGGATACGTTGTTGAAGATGAGAGGACTCAAAG 1270
Query 385 TACTCGATCTGTCTTTCAATGAGTTTTCC-G-G------C-GAA--TCT---G--TC--T 426
|||| |||||||||||||| ||||||||| | | | ||| ||| | || |
Sbjct 1271 TACTTGATCTGTCTTTCAACGAGTTTTCCGGCGAATTACCGGAATCTCTGACGAATCTAT 1330
Query 427 --GCTTCGTTGCTAACGCTAGATCTCAGCTCCAACTATTTTTCCGGTCCGATTTTCCCAA 484
||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 1331 CCGCTTCGTTGCTAACGTTAGATCTCAGCTCCAACAATTTCTCCGGTCCGATTCTCCCAA 1390
Query 485 ATCTCTGTCGGAATCCTAAAAATAATCTCCAGGAGCTTTACCTTCAGAACAATGGCTTCA 544
||||||| | ||| |||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 1391 ATCTCTGCCAGAACCCTAAAAACACTCTGCAGGAGCTTTACCTTCAGAACAATGGCTTCA 1450
Query 545 CCGGGAAGATCCCACCGACGTTAAGCAACTGCTCTGAGCTCGTTTCGCTTCACTTGAGCT 604
|||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1451 CCGGGAAGATTCCACCGACTTTAAGCAACTGTTCTGAGCTGGTTTCGCTTCACTTGAGCT 1510
Query 605 TCAATTACCTCTCCGGGACAATTCCTTCGAGCTTAGGCTCCCTATCGAAGCTTCAAGATC 664
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 1511 TCAATTACCTCTCCGGGACAATCCCTTCGAGCTTAGGCTCTCTATCGAAGCTTCGAGATC 1570
Query 665 TGAAACTATGGCTGAATATGTTAGAAGGAGAGATCCCTCACGAGCTCATGTATGTCAAGA 724
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1571 TGAAACTATGGCTGAATATGTTAGAAGGAGAGATCCCTCAGGAGCTCATGTATGTCAAGA 1630
Query 725 CTTTAGAGACTCTGATTCTCGATTTCAACGACTTAACCGGTGAAATCCCTT 775
| |||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1631 CCTTAGAGACTCTGATCCTCGACTTCAACGATTTAACCGGTGAAATCCCTT 1681
Score = 182 bits (98), Expect = 6e-45
Identities = 120/130 (92%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 142 GATGTTTCTCGTTGCGTGACTCTCAAGTTTCTCGATGTTTCTTCCAACAATTTCTCCATT 201
||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||| |
Sbjct 814 GATGTTTCTCGCTGCGTGAATCTCGAGTTTCTCGATGTTTCCTCCAACAATTTCTCCACT 873
Query 202 GGGATTCCATTT-CTCGGAGATTGCT-TGGCTTTGCAACATCTTGACATCTCCGGGAACA 259
|||||||| ||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 874 GGGATTCC-TTTCCTCGGAGATTGCTCT-GCTCTGCAACATCTTGACATCTCCGGGAACA 931
Query 260 AATTATCCGG 269
||||||||||
Sbjct 932 AATTATCCGG 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5