BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914415
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydr... 922 0.0
> AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase
2B4 | chr3:17716867-17720020 REVERSE LENGTH=2009
Length=2009
Score = 922 bits (499), Expect = 0.0
Identities = 662/735 (90%), Gaps = 34/735 (5%)
Strand=Plus/Plus
Query 1 AAGGTCAAGAGTAATGTT-AAGTTTGTAGATTTGGTTGAGAAACACAGCGAAGAACTCGC 59
|||||||||||| |||| | ||||| ||||||||||||||||||||||||||| |||||
Sbjct 537 AAGGTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGC 596
Query 60 GTCTCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCC 119
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 597 GTCTCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCC 656
Query 120 AATGTTTGCAAGATTGTTCCGTTACTATGCT---TGGGCGGATAAGATTCATGGACTAAC 176
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 657 CATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAAC 716
Query 177 AGTTCCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCTGG 236
| |||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct 717 AATTCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGG 776
Query 237 ACAGATCATTCCTG-GGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTACTC 295
||||||||| || | |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 777 ACAGATCATACC-GTGGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTC 835
Query 296 TTGCTTGTGGTAACACCACTGTCCTTAAAACCGCTGAGCAAACACCTCTCACGGCTTTCT 355
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 836 TTGCTTGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCT 895
Query 356 ATGCTGGCAAGCTTTTACTTGAAGCTGGTCTTCCTCCTGGTGTTCTGAATATAGTTTCTG 415
||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 896 ATGCTGGAAAGCTTTTCCTTGAAGCGGGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGG 955
Query 416 GATTCGGTGCAACTGAAGG-GATGCCCTCGCGA--C-T-TG--------C----TT--TT 456
||||||||||||| | ||| | ||||||||||| | | || | || ||
Sbjct 956 GATTCGGTGCAACAGCAGGTGCTGCCCTCGCGAGTCATATGGATGTAGACAAGCTTGCTT 1015
Query 457 --ACAGGATCGACTGATACAGTCAAAGTTATACTTGGATTGGCTGCCAACAGCAATCTTA 514
||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 1016 TTACAGGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGCAATCTTA 1075
Query 515 AGCCGGTAACTCTGGAACTTGGAGGGAAATCACCATTCATCGTATTCGAAGATGCTGATA 574
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 AGCCCGTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATA 1135
Query 575 TTGATAAGGCCGTA----TTGCACACTTTGCCCTCTTCTTCAACC-GA--CAATCTTGCT 627
||||||| || ||| ||||||||||||||||||||||||||| | |||| |||||
Sbjct 1136 TTGATAAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCT 1195
Query 628 GCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAA 1255
Query 688 AGGCACGGGCATTGA 702
||||||| |||||||
Sbjct 1256 AGGCACGCGCATTGA 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5