BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914416
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52460.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 673 0.0
AT1G52440.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 418 4e-116
AT1G52470.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 350 1e-95
> AT1G52460.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19549331-19551282 FORWARD LENGTH=828
Length=828
Score = 673 bits (364), Expect = 0.0
Identities = 592/695 (85%), Gaps = 44/695 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGCTTCTGGTAGTAGAAACAGAGGAGATGTACTTGATTCTGTTGTGCAACCTAAA 60
|||||||||||| ||||||| |||||| | | | | | || ||||||||||||||||
Sbjct 38 ATGGCGGCTTCTAGTAGTAGCAACAGA-G-CA-G-A--T--TT-TGTTGTGCAACCTAAA 88
Query 61 GGAGAGCATAGGGTCACTATAGTATGGCTGCATGATAAGGATGAGCATTTCACTGATTCA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 89 GGAGAGCATAGAGTCACTATAGTATGGCTGCATGATAAGGATGAGCATTTCTCTGATTCA 148
Query 121 GTTCAGTTTGTGAAAAAATTGAATCGTAAAAACGTCAAATGGATATGTCCATCTCTCGTG 180
|||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 149 GTTCAGTTTGTGAAAATTTTGAATCTTAATAATATCAAATGGATATGTCCATCTCTCGTG 208
Query 181 TTCCCAGA-TTC-ATGGAACAAACCCGGATATAAAATCAACCAATATGTTCGAGAGGCTT 238
||||| | ||| | |||||||||||| |||||| ||||||| ||| | | |
Sbjct 209 CTCCCA-ACTTCGA-GGAACAAACCCGAATATAATATCAACC---ATG--C---A----T 254
Query 239 TATATCCCACAGCTGAACTTGTTAATAAACTTTCCTTGGAAGAACCAGAAAATGTCATAA 298
|||||| |||||||||| |||| ||| |||| || ||| |||||||||||||||||||
Sbjct 255 TATATCTGACAGCTGAACGTGTTGCTAACCTTTTCTCGGATGAACCAGAAAATGTCATAA 314
Query 299 AAGGAGTGGGTGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTTTGCAACAAGTTGTG 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AAGGAGTGGGAGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTTTGCAACAAGTTGTG 374
Query 359 CTCTTAACCATTATCCTATAAATCCTCGAGTTGTTGTTGCAATCAGCGGGTGGCTTGCTA 418
|||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||
Sbjct 375 CTCTTAACCATTATACTATAAATCCCCGAGTTGTTGTTGGAATCAGCGGGTGGCTTTCTA 434
Query 419 AGGC-ATG-GTCCGTAAAAA-ACAGCATAGAATTTTATACACT-TGTTGCTAAATCTCGT 474
|||| | | | || ||||| | || ||||||||| | || | || ||| | |||||
Sbjct 435 AGGCGAAGAG-CC-TAAAACGA-AGTATAGAATTTGCTTCA-TATGAGGCTCCACCTCGT 490
Query 475 GCTGCATTGCAGTCAATCTTTCTTACGCATGGA-ATAGACGATCCTGTAGTTCCTCAC-T 532
||||||| |||||||||||| ||||| |||||| | ||| |||| ||| | |||||| |
Sbjct 491 GCTGCATCGCAGTCAATCTTACTTACACATGGACAAAGA-GATCATGT--T-CCTCACCT 546
Query 533 CATGTAGCTGTGGAGAAGAAGCTGCTGCG-TCCCTTATAAATGCTGGATTTGGAGAGGTC 591
|||| |||||||||||||||||||| | | ||| | | ||||||||| |||| |||
Sbjct 547 -ATGTGGCTGTGGAGAAGAAGCTGCTTTTATAC-TTAGAGAGGCTGGATTTAGAGACGTC 604
Query 592 AGGTTCCTACCATTAGCAAGGTTTGGACCGA-CTGCTCATGAGATCAATCGCAGCGAAAT 650
|||||| ||||||| |||||||||||||||| | ||||||||||||||||||| || |||
Sbjct 605 AGGTTCTTACCATTTGCAAGGTTTGGACCGATC-GCTCATGAGATCAATCGCAACGTAAT 663
Query 651 GGTCAAAAGCTGGTTGGAAGAGAAGCTCCCGCTCG 685
||||||||||||||| |||||||||||||||||||
Sbjct 664 GGTCAAAAGCTGGTTAGAAGAGAAGCTCCCGCTCG 698
> AT1G52440.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19538821-19540907 FORWARD LENGTH=810
Length=810
Score = 418 bits (226), Expect = 4e-116
Identities = 342/397 (86%), Gaps = 11/397 (3%)
Strand=Plus/Plus
Query 293 TCATAAAAGGAGTGGGTGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTTTGCAACAA 352
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 197 TCATAAAAGGAGTGGGAGGTTTAGGAATGGGTGCAGCAGTAGCTCTCCACTTTGCAACAA 256
Query 353 GTTGTGCTCTTAACCATTATCCTATAAATCCTCGAGTTGTTGTTGCAATCAGCGGGTGGC 412
|||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||
Sbjct 257 GTTGTGCTCTTAACCATTATACTATAAATCCCCGAGTTGTTGTTGGAATCAGCGGGTGGC 316
Query 413 TTGCTAAGGCATGGT-CCGTAAAAAACAGCATAGAATTTTATACACTTGTTGCTAAATCT 471
|| |||| | || || ||||| ||| ||||||| | | ||| || ||| | ||
Sbjct 317 TTTCTAATTCGGGGAGCC-TAAAACGCAGTATAGAATCTGCTTCACATGGGGCTCCAGCT 375
Query 472 CGTGCTGCATTGCAGTCAATCTTTCTTACGCATGGAATA-GACGATCCTGTAGTTCCTCA 530
|||||||||| ||||||||||||| |||||||||||||| | |||| |||| | |||||
Sbjct 376 CGTGCTGCATCGCAGTCAATCTTTATTACGCATGGAATATG-CGATTCTGT--T-CCTCA 431
Query 531 CTCATGT-AGCTGTGGAGAAGAAGCTGCTGCGTCCCTTATAAATGCTGGATTTGGAGAGG 589
| | ||| | ||||||||||||||||| | |||||||| | | ||||||||| |||| |
Sbjct 432 CCCCTGTGA-CTGTGGAGAAGAAGCTGTTTTGTCCCTTAGAGAGGCTGGATTTAGAGACG 490
Query 590 TCAGGTTC-CTACCATTAGCAAGGTTTGGACCGACTGCTCATGAGATCAATCGCAGCGAA 648
||| |||| | |||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct 491 TCAAGTTCAC-ACCATTTGCAAGGTTTGGACCGACTGCTCATGAGAACAATCGCAACGTA 549
Query 649 ATGGTCAAAAGCTGGTTGGAAGAGAAGCTCCCGCTCG 685
||||||||||||||||||||||||||||||| |||||
Sbjct 550 ATGGTCAAAAGCTGGTTGGAAGAGAAGCTCCAGCTCG 586
Score = 243 bits (131), Expect = 2e-63
Identities = 175/196 (89%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGCTTCTGGTAGTAG--A-AACAGAGGAGATGTACTTGATTCTGTTGTGCAACCT 57
||||||||||||| |||||| | ||||||| ||||| || || || |||||||||||||
Sbjct 1 ATGGCGGCTTCTGATAGTAGAAACAACAGAGCAGATGAACCTGGTTTTGTTGTGCAACCT 60
Query 58 AAAGGAGAGCATAGGGTCACTATAGTATGGCTGCATGATAAGGATGAGCATTTCACTGAT 117
|||||||||||||| |||| ||||||||||||||||||||||||||||| || | |||||
Sbjct 61 AAAGGAGAGCATAGAGTCATTATAGTATGGCTGCATGATAAGGATGAGCGTTCCTCTGAT 120
Query 118 TCAGTTCAGTTTGTGAAAAAATTGAATCGTAAAAACGTCAAATGGATATGTCCATCTCTC 177
||| ||||||||||| || ||||||||| |||||| ||||||||||||||||| ||||||
Sbjct 121 TCACTTCAGTTTGTGGAACAATTGAATCTTAAAAATGTCAAATGGATATGTCCCTCTCTC 180
Query 178 GTGTTCCCAGATTCAT 193
|||||||| |||||||
Sbjct 181 GTGTTCCCCGATTCAT 196
> AT1G52470.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19553217-19555543 FORWARD LENGTH=1024
Length=1024
Score = 350 bits (189), Expect = 1e-95
Identities = 432/549 (79%), Gaps = 17/549 (3%)
Strand=Plus/Plus
Query 47 TTGTGCAACCTAAAGGAGAGCATAGGGTCACTATAGTATGGCTGCATGATAAGGATGAGC 106
||||| ||||| ||||||| || |||| || |||||||||||||||||||||||||||||
Sbjct 189 TTGTGGAACCTCAAGGAGATCAAAGGGCCAGTATAGTATGGCTGCATGATAAGGATGAGC 248
Query 107 ATTTCACTGATTCAGTTCAGTTTGTGAAAAAATTGAATCGTAAAAACGTCAAATGGATAT 166
|||||||||||||||| ||||||||||||| || || | |||||| ||||| ||||| |
Sbjct 249 ATTTCACTGATTCAGTGCAGTTTGTGAAAAGTTTAAAACTTAAAAATGTCAACTGGATTT 308
Query 167 GTCCATCTCTCGTGTTCCCAGATTCATGGAACAAACC-CGGATATAAAATCAACCAATAT 225
||||| || |||| | | || || ||| | || | | ||||| ||| ||||| ||| ||
Sbjct 309 GTCCACCTATCGTCTACACAAATACATCGTACGA-CTTCGGATCTAATATCAAACAAGAT 367
Query 226 GTTCGAGAGGCTTTATATCCCACAGCTGAACTTGTTAATAAACTTTCCTTG-GAAGAACC 284
| ||||||||| ||| || || ||||| || ||||| | | |||| ||| | |||||
Sbjct 368 GATCGAGAGGCATTAGATTCCGCAGCTAAATTTGTTGCTGATCTTTTATTGCGT-GAACC 426
Query 285 AGAAAATGTCATAAAAGGAGTGGGTGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTT 344
| ||||||| |||||||||| || || |||||||||||||||| |||||||||||| ||
Sbjct 427 ACTAAATGTCGTAAAAGGAGTAGGAGGCTTTGGCATGGGTGCAGTAGTAGCTCTCCAATT 486
Query 345 TGCAACAAGTTGTGCTCTTA-ACCATTATCCTATAAATCCTCGAGTTGTTGTTGCAATCA 403
|||||||| |||||||||| || |||||||||||||||| ||||||||||||| ||| |
Sbjct 487 TGCAACAAATTGTGCTCTTGGAC-ATTATCCTATAAATCCCCGAGTTGTTGTTGGAATTA 545
Query 404 GCGGGTGGCTTGCTAAGGCATGGTCCGTAAAAAACAGCATAGAATTTTATACACTTGTTG 463
||||||||| ||| | || | ||| || ||||||||||| ||||| ||| |
Sbjct 546 ATGGGTGGCTTTCTATTACGGGGAGCATAACAAGCAGCATAGAAT---ATACAGTTGGGG 602
Query 464 CTAAATCTCGTGCTGCATTGCAGTCAATCTTTCTTACGCATGGAATAGACGA-TCCTGTA 522
|| | |||||||||||| ||| ||||||| |||| | |||| ||| || || | ||
Sbjct 603 CTGTAGCTCGTGCTGCATCACAGAAAATCTTTTTTACACGTGGAGCAGA-GAATCGTCTA 661
Query 523 GTTCCTCACTCATGTAGCTGTGGAGAAGAAGCTGCTGCGTCCCTTATAAATGCTGGATTT 582
||||| || | | ||| |||||||| || || |||||||| | | ||||| |||
Sbjct 662 CTTCCTTACACC-----C-GTGAAGAAGAAGTTGTTGAGTCCCTTAGAGAGGCTGGTTTT 715
Query 583 GGAGAGGTC 591
||||| |||
Sbjct 716 GGAGACGTC 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5