BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914444
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16310.1 | Symbols: | Cation efflux family protein | chr1:5... 322 2e-87
> AT1G16310.1 | Symbols: | Cation efflux family protein | chr1:5578431-5580693
FORWARD LENGTH=1399
Length=1399
Score = 322 bits (174), Expect = 2e-87
Identities = 200/213 (94%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 65 GAAAGGAACGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCA 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GAAAGGAACGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCA 338
Query 125 ATGAGATGGAGACTATAAATGAAACTTGTTTTGCATCTGGTGTTCCAACTAAGGAAGAAA 184
|||||||||||||||| | |||| | ||||||||||||||||||||||| |||||||||
Sbjct 339 ATGAGATGGAGACTATCCACGAAAATGGTTTTGCATCTGGTGTTCCAACTGAGGAAGAAA 398
Query 185 TAAAGAAGCTTGCAAAGAGTGAGAGACTGGCAGTTCACATATCAAACGCAACAAATTTGG 244
| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 399 TGAAGAAGCTTGCAAAGAGTGAGAGACTTGCGGTTCACATATCGAACGCAACAAATTTGG 458
Query 245 TGCTTTTTGTGGCAAAGGTTTATGCCTCCATGG 277
|||||||||| ||||| ||||||||||| ||||
Sbjct 459 TGCTTTTTGTAGCAAAAGTTTATGCCTCTATGG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18247192887
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5