BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914459

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52827.1 | Symbols: CDT1, ATCDT1 | cadmium tolerance 1 | chr...   241    2e-63


> AT1G52827.1 | Symbols: CDT1, ATCDT1 | cadmium tolerance 1 | chr1:19671448-19671925 
REVERSE LENGTH=331
Length=331

 Score =  241 bits (130),  Expect = 2e-63
 Identities = 171/189 (90%), Gaps = 9/189 (5%)
 Strand=Plus/Plus

Query  1    ATGGCAATGTCAAGAAACAGCAAGACGAACACGGCTGCTTATACGCAACGTTTTACGGGT  60
            ||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||
Sbjct  66   ATGACAATGTCAAGAAACGGCAAGACGAACAAGGCTGCTTATTCGCAACGTTTTACGCGT  125

Query  61   TGTTCTGTTGCTGTTGCTGCTACGAGAAGTGCAAGTGTTGTTG-T--TGCGTTTGATTTC  117
            ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct  126  TGTTCTGTTGCTGTTGCTGCTACGAGAAGTGCAAGTGTTGTTGCTGCTGCGTTTGATTTC  185

Query  118  TAT----GTATCATCATCTCAAAATTATTCTCATTA-T-GTGTCCCTCGCATCGCATTTG  171
            |||    ||||||||||||||| |||| |||||||| | |||||||||||||| || |||
Sbjct  186  TATATATGTATCATCATCTCAACATTACTCTCATTAATTGTGTCCCTCGCATCACAATTG  245

Query  172  CTCTTTTAG  180
            |||||||||
Sbjct  246  CTCTTTTAG  254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5