BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914467

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52900.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) dom...   977    0.0  


> AT1G52900.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) domain 
family protein | chr1:19702211-19702916 REVERSE LENGTH=600
Length=600

 Score =  977 bits (529),  Expect = 0.0
 Identities = 565/583 (97%), Gaps = 0/583 (0%)
 Strand=Plus/Plus

Query  1    ATGATCTCTAGGGTTTTCAACTTCATGAAACAATCCAAAACCGCTCAGCTAAACAACAAA  60
            |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct  1    ATGATCTCTAGGGTTTTCAACTTCATGAAACAATCCGAAACAGTTCAGCTAAACAACAAA  60

Query  61   CTATTTCTCGATCTTCTCTCTTCCTCATCATCGGCCAAACCTAAAGTTTTGCATGACGTG  120
            |||||||||||||| ||||||||||| |||||||||||||| ||| ||||||| ||||||
Sbjct  61   CTATTTCTCGATCTCCTCTCTTCCTCGTCATCGGCCAAACCCAAAATTTTGCACGACGTG  120

Query  121  TTCATCAACCACAGAGGATCCGACACAAAGAGAAACATCGCAACATTGCTTTACGACAAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  121  TTCATCAACCACAGAGGATCCGACACAAAGAGAAACATCGCAACATTGCTTTATGACAAT  180

Query  181  CTCAAATATCGTAACTTACGTCCATTCCTGGATTGCAAGAACATGAAGCCCGGAGATAAG  240
            ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct  181  CTCAAATCTCGTAACTTACGTCCATTCTTGGATTCCAAGAACATGAAGCCCGGAGATAAG  240

Query  241  CTTTTTGATCATATCAACAGCGCGATTCTCACTTCTAAAGTCGCTGTAACGGTTTTTTCT  300
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTTTTTGATCATATCAACAACGCGATTCTCACTTCTAAAGTCGCTGTAACGGTTTTTTCT  300

Query  301  CCCAACTACTGCGATTCATATTTCTGTCTGCACGAGCTTGCTCTTATAATGGAGTCCAGG  360
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  301  CCTAACTACTGCGATTCATATTTCTGTCTGCACGAGCTTGCTCTTATAATGGAGTCCAGA  360

Query  361  AAAAGGGTCATACCGATATTCTGCGACATCAAACCTTCACAACTCGATGTTATGATCGAG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AAAAGGGTCATACCGATATTCTGCGACATCAAACCTTCACAACTCGATGTTATGATCGAG  420

Query  421  AGGGTGACATGTTCTGATGATGAAATCCAAAGGTTTAGATGGGCTCTTCAAGAAGCTAAA  480
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  421  AGGGTGACATGTTCTGATGATGAAATCCAAAGGTTTAGATGGGCCCTTCAAGAAGCTAAA  480

Query  481  GATATCGTTGGACTCACGTTTGATTCCTACAAAGGGAATTTATCGGAGGTTGTTACAATT  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  481  GATATCGTTGGACTCACGTTTGATTCCTACAAAGGGAATTTATCGGAGGTTGTTACAGTT  540

Query  541  GCATCGGATGTTATCGTCGAGAGATTGGTCGAGTTAGAGGCTA  583
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GCATCGGATGTTATCGTCGAGAGATTGGTCGAGTTAGAGGCTA  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5