BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914471
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52920.1 | Symbols: GCR2, GPCR | G protein coupled receptor ... 1818 0.0
> AT1G52920.1 | Symbols: GCR2, GPCR | G protein coupled receptor
| chr1:19709275-19711052 REVERSE LENGTH=1322
Length=1322
Score = 1818 bits (984), Expect = 0.0
Identities = 1152/1235 (93%), Gaps = 4/1235 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGAACGTTTTTTCCGTAATGAGATGCCGGAATTTGTACCGGAAGAATCCGCCGGA 60
||||||||||| |||||||| |||||||||||||| |||||||||||||| | |||||
Sbjct 5 ATGGGAGAACGGTTTTTCCGAAATGAGATGCCGGAGTTTGTACCGGAAGATTTATCCGGA 64
Query 61 GAAGAAGAAACTGTTACTGCAGGTAAAGATTCGTTGAGGAAACTGCTATCACTTCCGTAC 120
||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||
Sbjct 65 GAAGAAGAAACTGTTACCGAATGTAAAGATTCGTTGACGAAACTGCTATCACTTCCGTAC 124
Query 121 AAATCATTCTCCGAGAAGCTTCAGAGTTATGCTTTAAGCCTTAAAGATAAAGTAGTGTGG 180
||||||||||| ||||||||||| || |||||| ||||| | |||||||||||||| |||
Sbjct 125 AAATCATTCTCAGAGAAGCTTCACAGATATGCTCTAAGCATCAAAGATAAAGTAGTCTGG 184
Query 181 GAGACATGGGAAAGATCTGGAAAACGTGTTCGAGATTATAAATTGTATACTGGAGTTCTT 240
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 185 GAGACATGGGAACGATCTGGAAAACGTGTTCGAGATTATAACTTGTATACTGGAGTTCTT 244
Query 241 GGGACAGCTTATCTCTTGTTCAAATCTTATCAGGTTACTAGAAATGAAGATGATCTTAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GGGACAGCTTATCTCTTGTTCAAATCTTATCAGGTTACTAGAAATGAAGATGATCTTAAG 304
Query 301 CTATGCTTAGAGATTGTTGAGGCTTGTGATGTAGCTTCAAGAGATTCTGAGCGAGTGACA 360
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTATGCTTAGAGAATGTTGAAGCTTGTGATGTAGCTTCAAGAGATTCTGAGCGAGTGACA 364
Query 361 TTTATATGTGG-TCATGCTGGTGTATGTGCTCTTGGTGCTGTTGCAGCCAAGCATTTGGG 419
||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 365 TTTATATGTGGCT-ATGCTGGTGTATGTGCTCTTGGTGCTGTTGCAGCGAAGTGTTTAGG 423
Query 420 TGACAACCAGTTGCGGGATCGTTACTTAGCCCGTTTCCGAGGGATTAGGCTTCCTAGTGA 479
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TGATGACCAGTTATATGATCGTTACTTAGCCCGTTTCCGAGGGATTAGGCTTCCTAGTGA 483
Query 480 CTTGCCATACGAGTTGTTATATGGTAGAGCAGGATACTTGTGGGCGTGCTTGTTCTTGAA 539
||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 484 CTTGCCATATGAGTTGCTATATGGTAGAGCAGGATACTTGTGGGCGTGTTTGTTCTTGAA 543
Query 540 TAAGCATATCGGGGAGGATAGTGTATCATCTGAAAGAATGAGATCAGTGGTTGAGGAAAT 599
||||||||| || |||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 544 TAAGCATATTGGTCAGGAGAGTATATCATCTGAACGAATGAGATCAGTGGTTGAGGAAAT 603
Query 600 CTTTAGATCAGGAAGACAACTTGGGAATAGAGAAACTTGCCCGTTGATGTATGAGTGGCA 659
||| || ||||||||||||| ||||||| || |||||| || |||||||||||||||||
Sbjct 604 CTTCAGGGCAGGAAGACAACTCGGGAATAAAGGAACTTGTCCATTGATGTATGAGTGGCA 663
Query 660 CGGTAAGAGGTACTGGGGGGCTGCACACGGTTTAGCCGGGATCATGAATGTTTTGATGCA 719
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 664 CGGGAAGAGGTACTGGGGGGCTGCACACGGTTTAGCTGGGATCATGAATGTTTTGATGCA 723
Query 720 TATGGAACTTGAACCAGATGAAATCAAAGATGTCAAAGGTACGCTGAGTTATATGATACA 779
|| ||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 724 TACGGAACTTGAACCAGATGAAATCAAAGATGTCAAAGGTACACTAAGCTATATGATACA 783
Query 780 AAACCGTTTTCCTAGCGGGAATTACCTATCTAGCGAAGGAAGCGAATCGGATCGCCTTGT 839
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 784 AAACCGTTTTCCTAGCGGGAATTACCTATCTAGTGAAGGAAGCAAATCAGATCGCCTTGT 843
Query 840 TCACTGGTGTCACGGTGCTCCTGGTGTTGCTCTCACACTTGTAAAGGCAGCTCAGGTTTT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TCACTGGTGTCACGGTGCTCCTGGTGTTGCTCTCACACTTGTAAAGGCAGCTCAGGTTTA 903
Query 900 TAAGACAAAGGAATTTGTAGAGGCAGCAATGGAGGCAGGAGAAGTTGTGTGGAACCGTGG 959
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 904 TAACACTAAGGAATTTGTAGAGGCAGCAATGGAGGCAGGAGAAGTTGTGTGGAGCCGTGG 963
Query 960 ATTGCTTAAACGAGTAGGAATCTGTCACGGTATCAGCGGAAACACATACGTGTTTCTTTC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ATTGCTTAAACGAGTAGGAATCTGTCACGGTATCAGCGGAAACACATACGTGTTTCTTTC 1023
Query 1020 TCTATACCGGTTAACAGGAAAAGCAGAA-TATTTGTACCGCGCAAAAGCTTTCGCGTCTT 1078
|||||||||||||||| |||| || || |||||||||||||| ||||||||||||||||
Sbjct 1024 TCTATACCGGTTAACAAGAAACCCA-AAGTATTTGTACCGCGCTAAAGCTTTCGCGTCTT 1082
Query 1079 TCCTATTCGATAAATCAGAGAAACTCATCTTAGAAGGTAAAATGCATGGAGGAGATAGAC 1138
||||| |||||||||||||||| | |||| ||||||| |||||||||||||||||||||
Sbjct 1083 TCCTACTCGATAAATCAGAGAAGTTAATCTCAGAAGGTCAAATGCATGGAGGAGATAGAC 1142
Query 1139 CATTCTCTCTATTTGAAGGCATTGGAGGAATGGCCTACATGTTTCTCGACATGAACGATC 1198
| |||||||| |||||||| || |||||||||||||||||||| ||||||||||| ||||
Sbjct 1143 CCTTCTCTCTCTTTGAAGGTATCGGAGGAATGGCCTACATGTTACTCGACATGAATGATC 1202
Query 1199 CAACACAAGCTCTATTTCCAGGTTATGAACTCTAA 1233
||||||||||||| |||||||||||||||||||||
Sbjct 1203 CAACACAAGCTCTGTTTCCAGGTTATGAACTCTAA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5