BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914473
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31620.1 | Symbols: | Receptor-like protein kinase-related ... 569 1e-161
AT3G21965.1 | Symbols: | pseudogene, similar to OJ1058_A12.21,... 351 4e-96
AT3G21945.1 | Symbols: | Receptor-like protein kinase-related ... 285 4e-76
> AT2G31620.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr2:13451991-13452908 REVERSE LENGTH=768
Length=768
Score = 569 bits (308), Expect = 1e-161
Identities = 603/743 (81%), Gaps = 30/743 (4%)
Strand=Plus/Plus
Query 31 TTGGTTGTGGTGGCAATGCTACTCTTTTTTATACAGGGTGTATTGTCTCTAAACCAGACC 90
||||| |||||||| |||| | ||| |||||| || ||| ||||| ||||| ||||||
Sbjct 31 TTGGTCGTGGTGGCCATGCAATTCTCTTTTATCCACAATGTTTTGTCCCTAAATCAGACC 90
Query 91 AATGCTTATCTGCAACACATATGCGTCAACAGTGACGGGATATACAAGTCGGATAGTTCA 150
||| | |||||||||||||||||| |||||||||| || | ||||||| | | | ||||
Sbjct 91 AATTCGTATCTGCAACACATATGCATCAACAGTGAAGGAAAATACAAGGCAAAGAATTCA 150
Query 151 TATGAGAGCA-ATGTCAAACATC-TCCTCGAGTTTATGTCTTCAC-CTCTAGACTACGGT 207
|| ||||||| | ||||| ||| | ||||| |||||| | || |||||||||||||
Sbjct 151 TACGAGAGCAGA-CTCAAAGATCAT-CTCGACAGTATGTC-TAACATTCTAGACTACGGT 207
Query 208 TTCA-CCAGCGGTACCAGTAGT----A--AT-G-ACAT-CTACGCCAAGTTCCAGTGTCG 257
|||| ||| |||| || || | | | || | |||| |||| ||| |||||
Sbjct 208 TTCATCCA-CGGTGTTGGTGGTGCGGATTCTAGTACCTACTACATCAAGGCCCAATGTCG 266
Query 258 GGGCGACGTCTCTGAATCCAAGTGCCGCTCTTGCCT-TACCACCGCCTTCTCTGCGATTC 316
||| || | ||| ||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 267 GGGAGATGCCTCCGAATCCAAGTGCCGCTCTTGCCTCT-TTACCGCCTTCTCTGGGATTC 325
Query 317 GTAGAAGATGTCCGAATAACAAAGGGAGAATAATATGGTACGACAACTGTGTTCTCGACC 376
||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 326 TTAGGAGATGTCCGAACAACAGAGGGAGAATAATATGGTACGACAACTGTTTTCTCTACA 385
Query 377 TTTCTTCGATTTATACCTATGATAAAG-TCGATTACAAGCAC-AGTTTCTATGTGTACAA 434
|||| ||| |||||||| || ||| | |||| ||||||| | ||| ||| || ||||
Sbjct 386 TTTCCGAGATATATACCTACGA-GAAGATTGATTTCAAGCACTA-TTTGTATTTGCACAA 443
Query 435 CGCGAAAGATGTGAGCGGCAATACAAAGTCGTTCAACAAGAACACGAACACTCTCCTCTA 494
|| ||||||||||||||||||| ||||| ||||||||||||||| || ||||||| |
Sbjct 444 TGCCAAAGATGTGAGCGGCAATAAAAAGTTGTTCAACAAGAACACAAAGGCTCTCCTAGA 503
Query 495 TAAGCTGAAGGAGAAAGCAACTAGGAAAGAGCAAGAGCAGTACACAAAAGACTACATGTA 554
|||||| ||||||||||||| | | ||||| ||||||| ||||||| ||||||||||||
Sbjct 504 TAAGCTCAAGGAGAAAGCAATTCGTAAAGAACAAGAGCCTTACACAAGAGACTACATGTA 563
Query 555 TGCGA-CCGGGGAAGAAAGTCTCGGGACGATGAAATTGTACGCAATGGTGCAATGTACGC 613
||| | | ||||| |||||||||||||||| ||||||||| | ||| |||| ||||| |
Sbjct 564 TGC-AGCGGGGGAGGAAAGTCTCGGGACGACGAAATTGTATGGGATGATGCAGTGTACAC 622
Query 614 AGGATTTATCGA-TCAAAAATTGTAGTGTGTGTTTGGATTGGATAATGGGGAAGCTTCCG 672
| || ||||| | | |||||||| |||||||||||||||| ||| || | ||||||||
Sbjct 623 AAGACTTATC-AGTTAAAAATTGCAGTGTGTGTTTGGATTCGATTATTGCAAAGCTTCCC 681
Query 673 AGATGCTGCAACGGTAAACAAGGAGGAAGAGTTTAT-AATCCCAACTGTAATTTTAGGTA 731
|||||||||||||||||||||||||||||||||| | ||||| | |||| |||||||||
Sbjct 682 AGATGCTGCAACGGTAAACAAGGAGGAAGAGTTT-TGAATCCGAGTTGTACTTTTAGGTA 740
Query 732 CGAGCTTTACCCTTTTTGTAAAA 754
|||||| || |||||| ||||||
Sbjct 741 CGAGCTCTATCCTTTT-GTAAAA 762
> AT3G21965.1 | Symbols: | pseudogene, similar to OJ1058_A12.21,
contains Pfam profile: PF01657 Domain of unknown function;
blastp match of 34% identity and 2.8e-22 P-value to GP|28411826|dbj|BAC57301.1||AP003863
OJ1058_A12.21 {Oryza sativa (japonica
cultivar-group)} | chr3:7740234-7741147 FORWARD LENGTH=914
Length=914
Score = 351 bits (190), Expect = 4e-96
Identities = 388/480 (81%), Gaps = 27/480 (6%)
Strand=Plus/Plus
Query 312 GATTCGT-AGAAGATGTCCGAA-TAACAAAGGGAGAATAATATGGTACGACAACTGTGTT 369
||||||| |||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 443 GATTCGTAAGAA-ATGTCCGAACT-ACAAAGGGAGAATAATATGGTACGACAACTGTCTT 500
Query 370 CTCGACCTTTCTTCGATTTATACC-TATGAT-AAAGTCGATTA-CAAGCACAGTTTCTAT 426
|| ||| |||| ||||| |||||| | || | ||| ||||||| | | |||| |||| ||
Sbjct 501 CTGGACATTTCATCGATCTATACCCT-TGCTGAAA-TCGATTAGCGA-CACATTTTCAAT 557
Query 427 GTGTACAACGCGAAAGATGTGAGCGGCAATACAAAGTCGTTCAACAAGAACACGAACACT 486
||||||||||||| ||||||||| || |||||| | |||||||||||||||||| ||
Sbjct 558 ATGTACAACGCGAAGGATGTGAGCAGCGATACAATGGCGTTCAACAAGAACACGAGGGCT 617
Query 487 CTCCTCTATAAGCTGAAGGAGAAAGCAACTAGGAAAGAGCAAGAGC-AG-T-ACACAAAA 543
|| |||||| ||||||||||||||||| ||| ||| | |||| | | | | | | |
Sbjct 618 CTTCTCTATGCGCTGAAGGAGAAAGCAATTAGTAAA-A--AAGAACTACCTTATAGGAGA 674
Query 544 GACTACATGTATGCGACCGGGGAAG-AAAGTCTCGGGACGATGAAATTGTACGCAATGGT 602
|||||| ||||| | | ||||| || |||| ||||||| | ||| |||||||||||||
Sbjct 675 GACTACTTGTATTC-AGCGGGGGAGGAAAGCCTCGGGAAAAAAAAAGTGTACGCAATGGT 733
Query 603 GCAATGTACGCAGGATTTATC-GATCAAAAATTGTAGTGTGTGTTTG-GATTGGATAATG 660
|| |||||| |||| ||||| | | |||||||||||||| |||||| | || || ||
Sbjct 734 ACAGTGTACGAAGGACTTATCAGCT-AAAAATTGTAGTGTCTGTTTGAG-TTATATTTTG 791
Query 661 GGGAAGCTTCCGAGATGCTGCAACGGTAAACAAGGAGGAAGAGTTTATAA-TCCCAACTG 719
||||||||| | ||||||||| ||||||||||||||||| |||| | | ||| | |||
Sbjct 792 TCGAAGCTTCCCAAATGCTGCAAGGGTAAACAAGGAGGAAGTGTTT-TGAGTCCGAGCTG 850
Query 720 TAATTTTAGGTACGAGCTTTACCCTTTTTGTAAAAACTTAAAAGACTGTCTAATGAGAGC 779
|||||||||||| ||||||||||||||| || || |||| | |||| | | ||||||||
Sbjct 851 TAATTTTAGGTATGAGCTTTACCCTTTT-GTGAAGACTTGA--GACTCTTTGATGAGAGC 907
> AT3G21945.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7732458-7733294 FORWARD LENGTH=473
Length=473
Score = 285 bits (154), Expect = 4e-76
Identities = 281/342 (82%), Gaps = 10/342 (3%)
Strand=Plus/Plus
Query 442 GATGTGAGCGGCAATACAAAGTCGTTCAACAAGAACACGAACACTCTCCTCTATAAGCTG 501
||||||||||| || |||| || |||||| |||| |||| ||||||||||||||||||
Sbjct 133 GATGTGAGCGGTGATGCAAAATCATTCAACGAGAAGACGAGGACTCTCCTCTATAAGCTG 192
Query 502 AAGGAGAAAGCAACTAGGAAAGAGCAAGAGCAGTACACAA-AAGACT-ACATGTATGCGA 559
||||||||||||| ||| ||||| || | | | |||| || | | || | ||||| |
Sbjct 193 AAGGAGAAAGCAAGTAGTAAAGAA-AACATCCCCA-ACAAGAAAAATTACTTATATGCAA 250
Query 560 CCGGGGAAGAAAGTCTCGGGACGATGAAATTGTACGCAATGGTGCAATGTACGCAGGATT 619
| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| || |
Sbjct 251 CAGGGGAGGAAAGTCTCGGGAAGATGAAACTGTACGCAATGGTGCAATGTACGCAAGACT 310
Query 620 TATCGATCAAAAATTGTAGTGTGTGTTTGGATTGGATAATGGGGAAGCTTCCGAGATGCT 679
|||| || |||||||||| |||||||||| | ||||| ||||||||||||| | ||| |
Sbjct 311 TATCAATTAAAAATTGTAATGTGTGTTTGAACTGGATTCTGGGGAAGCTTCCCAAATGTT 370
Query 680 GCAACGGTAAACAAGGAGGAAGAGTTTATAA-TCCCAACTGTAATTTTAGGTACGAGCTT 738
|||||| |||||||||||||||| ||| | | | | | |||||||||||||| ||||||
Sbjct 371 GCAACGATAAACAAGGAGGAAGATTTT-TGAGTACGAGTTGTAATTTTAGGTATGAGCTT 429
Query 739 TACCCTTTTTGTAAAAACTTAAAAGACTGTCTAATGAGAGCT 780
|||| | ||||||||| |||| |||| | ||| |||||||
Sbjct 430 TACC-TCTTTGTAAAA-CTTAC--GACTATTTAACGAGAGCT 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5