BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914534
Length=2643
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53470.1 | Symbols: MSL4 | mechanosensitive channel of small... 4137 0.0
> AT1G53470.1 | Symbols: MSL4 | mechanosensitive channel of small
conductance-like 4 | chr1:19958587-19961578 FORWARD LENGTH=2646
Length=2646
Score = 4137 bits (2240), Expect = 0.0
Identities = 2519/2653 (95%), Gaps = 21/2653 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGTTGATTCGAA-TGATCAACGGCGAGATGTTGTTGTCAA-GATCGACGGTGAAG 58
|||||||||||||| || |||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1 ATGGCCGTTGATTC-AACTGATCAACGGCGAGATTTTGTTGT-AAGGATCGACGGTGAAG 58
Query 59 ACAATGGTGATTCAGAAAAGTTTTGGAGAGAATCAAGCATTAACTTCTGGCATACTGATA 118
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 59 ACAATGGTGACTCAGAAAAGTTTTGGAGAGAGTCAAGCATTAACTTCTGGCATAATGATA 118
Query 119 AGAGCTCTAAACCACCCGGAGGTGGAGAAGACGACGGAAGTTTTGATTTCATGCGGCGGA 178
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 119 AGAGCTCTAAACCACCCGGAGGTGAAGAAGACGACGGAAGCTTTGATTTCATGCGGCGGA 178
Query 179 GGAGTGATAAATCAAAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTAGTGAGAAATCGGAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238
Query 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298
Query 299 AAAGCAACACGATTCCT-C-C-GTCCT-TGGGTGCAGTTTCCGGCTCTGCTTCACCAGTA 354
||| || ||| ||||| | | ||| | | ||||||||||| |||||||||||||||
Sbjct 299 AAAAAAATACGGTTCCTCCTCTGTCGTCAACG-GCAGTTTCCGGTTCTGCTTCACCAGTA 357
Query 355 ACGGCGACGGCT-ACGGCAAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 413
|| ||| | | | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACCGCGCCAG-TGACGGCGAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 416
Query 414 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATAGTGATAGTAGTGGAGATGAAGAAAA 473
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 417 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATGGTGATAGTAGTGAAGATGAAGAAAA 476
Query 474 CAGAGTAGATGGATTAGAGGTTGTCAAGTGTAGCTCCAATAGATCGACGATGAGGACTAA 533
|||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 477 CAGAGTAGATGGATCAGAGGTTGTGAAGTGTACCTCTAATAGATCGACGATGAGGACTAA 536
Query 534 GACTTTGATGAAGACGAAGACTAGATCTAGATTGATGGATCCTCCAACTCCGACGTATCC 593
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 GACTTTGATGAAGATGAAGACTAGATCTAGATTGATGGATCCTCCTACTCCGACGTATCC 596
Query 594 GGAGATGGTTTCTGGTCGGACTCCAAAGTCCGGGAACT-TAAAACCCGGTTTTAGTGGGA 652
||| |||||||| ||||||||||||| ||||||||| | |||| ||||| ||||||||||
Sbjct 597 GGATATGGTTTCGGGTCGGACTCCAAGGTCCGGGAA-TCTAAATCCCGGGTTTAGTGGGA 655
Query 653 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGAGCCATGGATTTGGAAGAAGAGGAAG 712
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 656 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGATCCAAGGATTTGGAAGAAGAGGAAG 715
Query 713 ATCCTTTCTCGGAGGAGGATTTACCGGAAGGTTTAAGGAAGGAGAAG-TTATGTGTTTGG 771
|||| ||||| |||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 716 ATCCCTTCTCAGAGGAGGATTTACCTGAAGGTTTAAGGAAGGAGAAGATT-TGTGTTTGG 774
Query 772 GTTATTATGGAATGGATTTTTCTGATTCTGATCATTGCTGGTTTGATTTGTAGCCTTGTT 831
|||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 775 GTTATTATAGAATGGATATTTCTGATTTTGATCATTGCTAGTTTGATTTGTAGCCTAGTC 834
Query 832 ATACCTTACTTGCGTGGTAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 891
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATACCTTACTTGCGTGGCAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 894
Query 892 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCGAGTTGGTTTGTGAAGCTATTCGTCTAC 951
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 895 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCTAGTTGGATTGTGAAGCTATTCGTTTAC 954
Query 952 TTTGTCGAAAGCAATTTTCTTTGGAGAAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1011
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 955 TTCGTTGAAAGCAATTTTCTTTGGAGGAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1014
Query 1012 AAGGCGGTACAGAATTGTCTTTGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1071
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAGCCGGTGCAGAATTGTCTATGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1074
Query 1072 GACAAGAAAGTAGAAAGAGAGATGCGAAGCACTGTGCTTAAGTATGTGACTAAAGTGTTA 1131
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1075 GACAAGAAAGTTGAAAGAGAGATGCGAAGTACTGTGCTTAAGTATGTGACTAAAGTATTA 1134
Query 1132 ATTTGTCTACTCGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1191
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATCTGTTTACTTGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1194
Query 1192 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGAATTCAAGAATCGTTGTTTACTCAA 1251
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1195 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGGATTCAAGAATCGTTGTTTACTCAA 1254
Query 1252 TATGTGATTGAGACTCTCTCGGGACCTCCTCGCATTGAGATTCATATAGAAGAGGAGAAA 1311
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1255 TACGTGATTGAGACGCTCTCGGGACCTCCTCGTATTGAGATTCATATAGAAGAGGAGAAA 1314
Query 1312 GTAGCAAACGAT-ATAAAGACCTTCGAGATAGCGGGACGTAAGCTATCTCCTCTAGGTCC 1370
|||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1315 GTAGCAAATGATGTTAAA-ACCTTCGAGATAGTTGGACGTAAGCTATCTCCTCTAGGTCC 1373
Query 1371 AAAGGCGGCTTCTTCTTCGCCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1430
|||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AAAGGCGGTTTCTTCTCCACCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1433
Query 1431 AAGTAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTGTGGTTCTAAGAAAGAAGGAGAGAA 1490
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1434 AAGCAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTCTGGTTCTAAGAAAGAAGGAGGGGA 1493
Query 1491 AGAAGGGATAAGGATCGATCATTTGCAGAGAATGAACACTAAAAACGTTTCAGCTTGGAA 1550
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1494 AGAAGGGATACGGATCGATCATTTGCAGAGAATGAACACTAAGAACGTTTCAGCTTGGAA 1553
Query 1551 AATGAAGAGGCTGATGAATGTTAT-AAGAAAAGGAACTCTTTCTACTTTGGATGAACAGA 1609
|||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 1554 AATGAAGAAACTGATGAATGTTATCAA-AAAAGGAACTCTTTCTACTTTAGATGAACAGA 1612
Query 1610 TACAGGACACGACGACTCAAGAAGATGATAAAGCCACACAAATAAGAAGTGAATTTGAAG 1669
|||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1613 TACAAGACACGACGACTCAGGAAGATGATAAGGCCACACAGATAAGAAGTGAATTCGAAG 1672
Query 1670 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1732
Query 1730 ATATGGAAGACTTTATGCGTTTTCTGTCAGAAGATGAGTCTGAAAGAGCAATGGATCTCT 1789
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1733 ATATGGAAGACTTTATGCGTTTTCTGTCCGAAGATGAGTCTGAAAGAGCAATGGATCTAT 1792
Query 1790 TTGAAGGAGCTTCTGAAAGTCACAAAATCAGTAAATCTTGTCTGAAGAATTGGGTGGTTA 1849
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1793 TTGAAGGAGCTTCTGAATGTCACAAAATCAGCAAATCTTGTCTGAAGAATTGGGTGGTTA 1852
Query 1850 ATGCTTTTAGAGAACGAAGAGCACTAGCTCTAACATTAAACGATACAAAAACAGCAGTGA 1909
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1853 ATGCCTTTAGAGAACGAAGAGCACTAGCTTTAACATTAAACGATACAAAAACAGCAGTGA 1912
Query 1910 ACAGGCTTCATCGAATCGTCGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1969
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 ACAGGCTTCATCGAATCGTTGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1972
Query 1970 TCATTCTCGGAATCGCTACAACTAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2029
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1973 TCATTCTGGGAATCGCTACAACCAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2032
Query 2030 TAGTCTTTGTGTTTGGAAATTCATGCAAAACCATCTTTGAAGCTGTCATTTTCGTCTTCG 2089
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 2033 TAGTCTTTGTGTTTGGAAATTCATGTAAAACCATCTTTGAAGCGGTCATCTTCGTCTTCG 2092
Query 2090 TTATGCATCCGTTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGCTGATTGTGG 2149
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2093 TTATGCATCCATTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGATGATTGTGG 2152
Query 2150 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2212
Query 2210 CCAACAGTCTTCTCGGTACAAAACCTATCGCTAACTATTACCGCAGTCCCGATATGCAAG 2269
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2213 CAAACAGTCTTCTCGGAACAAAACCTATCGCTAACTATTACCGCAGTCCTGATATGCAAG 2272
Query 2270 ATGCCATTGAGTTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACCGCCTTGAA-A 2328
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 2273 ATGCCATTGAATTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACTGCCTT-AAGA 2331
Query 2329 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATC 2388
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATT 2391
Query 2389 GTGTTTAGAGATATGTGTGGACTAAACAGTGTGAAGATCGCGATGTGGCCAACACATAAG 2448
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2392 GTGTTTAGAGATATGTGTGGATTAAACAGTGTGAAGATCGCAATGTGGCCAACACATAAG 2451
Query 2449 ATGAATCATCAAGATATGGGAGAAAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2508
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2452 ATGAATCATCAAAATATGGGAGAGAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2511
Query 2509 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2512 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2571
Query 2569 AAAAGTCTTCCTGCTGCTACTCCGATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2628
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2572 AAAAGTCTTCCTGCTGCTACTCCCATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2631
Query 2629 CAACGCAGTGTTT 2641
|||||||||||||
Sbjct 2632 CAACGCAGTGTTT 2644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131236722888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5