BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914534 Length=2643 Score E Sequences producing significant alignments: (Bits) Value AT1G53470.1 | Symbols: MSL4 | mechanosensitive channel of small... 4137 0.0 > AT1G53470.1 | Symbols: MSL4 | mechanosensitive channel of small conductance-like 4 | chr1:19958587-19961578 FORWARD LENGTH=2646 Length=2646 Score = 4137 bits (2240), Expect = 0.0 Identities = 2519/2653 (95%), Gaps = 21/2653 (1%) Strand=Plus/Plus Query 1 ATGGCCGTTGATTCGAA-TGATCAACGGCGAGATGTTGTTGTCAA-GATCGACGGTGAAG 58 |||||||||||||| || |||||||||||||||| ||||||| || |||||||||||||| Sbjct 1 ATGGCCGTTGATTC-AACTGATCAACGGCGAGATTTTGTTGT-AAGGATCGACGGTGAAG 58 Query 59 ACAATGGTGATTCAGAAAAGTTTTGGAGAGAATCAAGCATTAACTTCTGGCATACTGATA 118 |||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 59 ACAATGGTGACTCAGAAAAGTTTTGGAGAGAGTCAAGCATTAACTTCTGGCATAATGATA 118 Query 119 AGAGCTCTAAACCACCCGGAGGTGGAGAAGACGACGGAAGTTTTGATTTCATGCGGCGGA 178 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 119 AGAGCTCTAAACCACCCGGAGGTGAAGAAGACGACGGAAGCTTTGATTTCATGCGGCGGA 178 Query 179 GGAGTGATAAATCAAAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238 | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GTAGTGAGAAATCGGAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238 Query 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298 Query 299 AAAGCAACACGATTCCT-C-C-GTCCT-TGGGTGCAGTTTCCGGCTCTGCTTCACCAGTA 354 ||| || ||| ||||| | | ||| | | ||||||||||| ||||||||||||||| Sbjct 299 AAAAAAATACGGTTCCTCCTCTGTCGTCAACG-GCAGTTTCCGGTTCTGCTTCACCAGTA 357 Query 355 ACGGCGACGGCT-ACGGCAAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 413 || ||| | | | ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ACCGCGCCAG-TGACGGCGAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 416 Query 414 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATAGTGATAGTAGTGGAGATGAAGAAAA 473 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 417 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATGGTGATAGTAGTGAAGATGAAGAAAA 476 Query 474 CAGAGTAGATGGATTAGAGGTTGTCAAGTGTAGCTCCAATAGATCGACGATGAGGACTAA 533 |||||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct 477 CAGAGTAGATGGATCAGAGGTTGTGAAGTGTACCTCTAATAGATCGACGATGAGGACTAA 536 Query 534 GACTTTGATGAAGACGAAGACTAGATCTAGATTGATGGATCCTCCAACTCCGACGTATCC 593 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 537 GACTTTGATGAAGATGAAGACTAGATCTAGATTGATGGATCCTCCTACTCCGACGTATCC 596 Query 594 GGAGATGGTTTCTGGTCGGACTCCAAAGTCCGGGAACT-TAAAACCCGGTTTTAGTGGGA 652 ||| |||||||| ||||||||||||| ||||||||| | |||| ||||| |||||||||| Sbjct 597 GGATATGGTTTCGGGTCGGACTCCAAGGTCCGGGAA-TCTAAATCCCGGGTTTAGTGGGA 655 Query 653 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGAGCCATGGATTTGGAAGAAGAGGAAG 712 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 656 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGATCCAAGGATTTGGAAGAAGAGGAAG 715 Query 713 ATCCTTTCTCGGAGGAGGATTTACCGGAAGGTTTAAGGAAGGAGAAG-TTATGTGTTTGG 771 |||| ||||| |||||||||||||| ||||||||||||||||||||| || ||||||||| Sbjct 716 ATCCCTTCTCAGAGGAGGATTTACCTGAAGGTTTAAGGAAGGAGAAGATT-TGTGTTTGG 774 Query 772 GTTATTATGGAATGGATTTTTCTGATTCTGATCATTGCTGGTTTGATTTGTAGCCTTGTT 831 |||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| || Sbjct 775 GTTATTATAGAATGGATATTTCTGATTTTGATCATTGCTAGTTTGATTTGTAGCCTAGTC 834 Query 832 ATACCTTACTTGCGTGGTAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 891 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 835 ATACCTTACTTGCGTGGCAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 894 Query 892 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCGAGTTGGTTTGTGAAGCTATTCGTCTAC 951 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| Sbjct 895 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCTAGTTGGATTGTGAAGCTATTCGTTTAC 954 Query 952 TTTGTCGAAAGCAATTTTCTTTGGAGAAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1011 || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 955 TTCGTTGAAAGCAATTTTCTTTGGAGGAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1014 Query 1012 AAGGCGGTACAGAATTGTCTTTGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1071 ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1015 AAGCCGGTGCAGAATTGTCTATGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1074 Query 1072 GACAAGAAAGTAGAAAGAGAGATGCGAAGCACTGTGCTTAAGTATGTGACTAAAGTGTTA 1131 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1075 GACAAGAAAGTTGAAAGAGAGATGCGAAGTACTGTGCTTAAGTATGTGACTAAAGTATTA 1134 Query 1132 ATTTGTCTACTCGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1191 || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 ATCTGTTTACTTGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1194 Query 1192 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGAATTCAAGAATCGTTGTTTACTCAA 1251 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1195 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGGATTCAAGAATCGTTGTTTACTCAA 1254 Query 1252 TATGTGATTGAGACTCTCTCGGGACCTCCTCGCATTGAGATTCATATAGAAGAGGAGAAA 1311 || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1255 TACGTGATTGAGACGCTCTCGGGACCTCCTCGTATTGAGATTCATATAGAAGAGGAGAAA 1314 Query 1312 GTAGCAAACGAT-ATAAAGACCTTCGAGATAGCGGGACGTAAGCTATCTCCTCTAGGTCC 1370 |||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 1315 GTAGCAAATGATGTTAAA-ACCTTCGAGATAGTTGGACGTAAGCTATCTCCTCTAGGTCC 1373 Query 1371 AAAGGCGGCTTCTTCTTCGCCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1430 |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 AAAGGCGGTTTCTTCTCCACCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1433 Query 1431 AAGTAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTGTGGTTCTAAGAAAGAAGGAGAGAA 1490 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 1434 AAGCAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTCTGGTTCTAAGAAAGAAGGAGGGGA 1493 Query 1491 AGAAGGGATAAGGATCGATCATTTGCAGAGAATGAACACTAAAAACGTTTCAGCTTGGAA 1550 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1494 AGAAGGGATACGGATCGATCATTTGCAGAGAATGAACACTAAGAACGTTTCAGCTTGGAA 1553 Query 1551 AATGAAGAGGCTGATGAATGTTAT-AAGAAAAGGAACTCTTTCTACTTTGGATGAACAGA 1609 |||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||| Sbjct 1554 AATGAAGAAACTGATGAATGTTATCAA-AAAAGGAACTCTTTCTACTTTAGATGAACAGA 1612 Query 1610 TACAGGACACGACGACTCAAGAAGATGATAAAGCCACACAAATAAGAAGTGAATTTGAAG 1669 |||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||| Sbjct 1613 TACAAGACACGACGACTCAGGAAGATGATAAGGCCACACAGATAAGAAGTGAATTCGAAG 1672 Query 1670 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1732 Query 1730 ATATGGAAGACTTTATGCGTTTTCTGTCAGAAGATGAGTCTGAAAGAGCAATGGATCTCT 1789 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1733 ATATGGAAGACTTTATGCGTTTTCTGTCCGAAGATGAGTCTGAAAGAGCAATGGATCTAT 1792 Query 1790 TTGAAGGAGCTTCTGAAAGTCACAAAATCAGTAAATCTTGTCTGAAGAATTGGGTGGTTA 1849 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 1793 TTGAAGGAGCTTCTGAATGTCACAAAATCAGCAAATCTTGTCTGAAGAATTGGGTGGTTA 1852 Query 1850 ATGCTTTTAGAGAACGAAGAGCACTAGCTCTAACATTAAACGATACAAAAACAGCAGTGA 1909 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1853 ATGCCTTTAGAGAACGAAGAGCACTAGCTTTAACATTAAACGATACAAAAACAGCAGTGA 1912 Query 1910 ACAGGCTTCATCGAATCGTCGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1969 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1913 ACAGGCTTCATCGAATCGTTGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1972 Query 1970 TCATTCTCGGAATCGCTACAACTAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2029 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1973 TCATTCTGGGAATCGCTACAACCAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2032 Query 2030 TAGTCTTTGTGTTTGGAAATTCATGCAAAACCATCTTTGAAGCTGTCATTTTCGTCTTCG 2089 ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 2033 TAGTCTTTGTGTTTGGAAATTCATGTAAAACCATCTTTGAAGCGGTCATCTTCGTCTTCG 2092 Query 2090 TTATGCATCCGTTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGCTGATTGTGG 2149 |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2093 TTATGCATCCATTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGATGATTGTGG 2152 Query 2150 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2153 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2212 Query 2210 CCAACAGTCTTCTCGGTACAAAACCTATCGCTAACTATTACCGCAGTCCCGATATGCAAG 2269 | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 2213 CAAACAGTCTTCTCGGAACAAAACCTATCGCTAACTATTACCGCAGTCCTGATATGCAAG 2272 Query 2270 ATGCCATTGAGTTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACCGCCTTGAA-A 2328 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 2273 ATGCCATTGAATTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACTGCCTT-AAGA 2331 Query 2329 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATC 2388 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2332 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATT 2391 Query 2389 GTGTTTAGAGATATGTGTGGACTAAACAGTGTGAAGATCGCGATGTGGCCAACACATAAG 2448 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 2392 GTGTTTAGAGATATGTGTGGATTAAACAGTGTGAAGATCGCAATGTGGCCAACACATAAG 2451 Query 2449 ATGAATCATCAAGATATGGGAGAAAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2508 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2452 ATGAATCATCAAAATATGGGAGAGAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2511 Query 2509 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2512 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2571 Query 2569 AAAAGTCTTCCTGCTGCTACTCCGATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2628 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2572 AAAAGTCTTCCTGCTGCTACTCCCATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2631 Query 2629 CAACGCAGTGTTT 2641 ||||||||||||| Sbjct 2632 CAACGCAGTGTTT 2644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 131236722888 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5